View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_low_129 (Length: 316)
Name: NF13763_low_129
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_low_129 |
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Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 15628875 - 15628578
Alignment:
| Q |
1 |
acattttgtaagtaaacaaatcctctattatcctctaccattcattaccttgcattgcaagcaattcccttagctgaattctcttattcatcatgccaac |
100 |
Q |
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| T |
15628875 |
acattttgtcagtaaacaaatcctctattatcctctaccattcattaccttgcattgcaagcaattcccttagctgaattctcttattcatcatgccaac |
15628776 |
T |
|
| Q |
101 |
ccttgttcaattcttgatactagttttactattgttcaattttgtgccagttttatcgcaagttaatcagttcttgtatgcaggattcaaggatgttggt |
200 |
Q |
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| T |
15628775 |
ccttgttcaattcttgatactagttttactattgttcaattttgtgtcagttttatcccaagttaaccagttcttgtatgcaggattcaaggatgttggt |
15628676 |
T |
|
| Q |
201 |
cccaacaatctaaccttgaatggatttgcagagatagagaaaaatgggatgataagattaacaaatcacacaaacaatgaaatgggccatgcttttta |
298 |
Q |
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| T |
15628675 |
cccaacaatcttaccttgaatggttttgcagagatagagaaaaatgggatgataagattaacaaatcacacaaacaatgaaatgggccatgcttttta |
15628578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 266
Target Start/End: Complemental strand, 22922603 - 22922526
Alignment:
| Q |
189 |
aaggatgttggtcccaacaatctaaccttgaatggatttgcagagatagagaaaaatgggatgataagattaacaaat |
266 |
Q |
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| T |
22922603 |
aaggatgttggtccaaaaaacctaaccttaaatggtatagcagagatagaaaaaaatggtataataagattaacaaat |
22922526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 298
Target Start/End: Original strand, 22932985 - 22933094
Alignment:
| Q |
189 |
aaggatgttggtcccaacaatctaaccttgaatggatttgcagagatagagaaaaatgggatgataagattaacaaatcacacaaacaatgaaatgggcc |
288 |
Q |
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||||||| |||| ||| |||| ||||||| || || ||||| |||||||||||||||| || ||||||||||||||| | ||| ||| |||||||| |
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| T |
22932985 |
aaggatggtggtgccagcaatttaaccttaaacggtgttgcaaagatagagaaaaatggaataataagattaacaaatgattcaagcaaattaatgggcc |
22933084 |
T |
|
| Q |
289 |
atgcttttta |
298 |
Q |
| |
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|||||||||| |
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| T |
22933085 |
atgcttttta |
22933094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 116
Target Start/End: Original strand, 22932867 - 22932915
Alignment:
| Q |
68 |
ccttagctgaattctcttattcatcatgccaacccttgttcaattcttg |
116 |
Q |
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| T |
22932867 |
ccttagctgatttctcttgttcatcatgccaacccatcttcaattcttg |
22932915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 266
Target Start/End: Complemental strand, 24382736 - 24382698
Alignment:
| Q |
228 |
gcagagatagagaaaaatgggatgataagattaacaaat |
266 |
Q |
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|||||||||||||||||||| || ||||||||||||||| |
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| T |
24382736 |
gcagagatagagaaaaatggtataataagattaacaaat |
24382698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 266
Target Start/End: Original strand, 36386045 - 36386081
Alignment:
| Q |
230 |
agagatagagaaaaatgggatgataagattaacaaat |
266 |
Q |
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|||||||||||||||||| || ||||||||||||||| |
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| T |
36386045 |
agagatagagaaaaatggtataataagattaacaaat |
36386081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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