View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13763_low_13 (Length: 691)
Name: NF13763_low_13
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_low_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 566; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 79 - 684
Target Start/End: Complemental strand, 49694564 - 49693959
Alignment:
| Q |
79 |
aatgccaagagcttattggaatttgatgttgagggttatgtcaacagcataatgctggagcataatacaagtgctggctatttagaacagaatcctgaaa |
178 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49694564 |
aatgccaacaacttattggaatttgatgttgagggttatgtcaacagcataatgctggagcataatacaagtgctggctatttagaacagaatcctgaaa |
49694465 |
T |
|
| Q |
179 |
caggtgaatctctatcagatgcctttgatgaaaatattgaatattttttggaacattgccaagaaaatgttgaagataatactacaacgattcaaagtat |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49694464 |
caggtgaatctctatcagatgcctttgatgaaaatattgaatattttttggaacattgccaagaaaatgttgaagataatactacaacgattcaaagtat |
49694365 |
T |
|
| Q |
279 |
tgcaactaatggaggtcaaagtgatgctgcttctcatcaagaatgcgagagtgagaaactggtaagcgtatcttactatgtagatgactcaaaagatatg |
378 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || | |||||||| ||||||||||||||| |
|
|
| T |
49694364 |
tgcaactaatggaggtcaaagtgatgttgcttctcatcaagaatgcgagagtgagaaactggtaagcgtaactgattatgtagacgactcaaaagatatg |
49694265 |
T |
|
| Q |
379 |
ttgcatgattcttctgttggttttgaatccaatgatggtgtttctgaaggtaatgaaattcagggtgttgagtattctgaactttctgatcctgcactct |
478 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49694264 |
ttgcatgattcttctgttggttttgaatccaatgatggtgtttctgaaggtaatgaaattcagggtgttgagtattctgaactttctgatcctgcactct |
49694165 |
T |
|
| Q |
479 |
ttgaagagtgtaaatatttgaaaaatggtttgtctgaaactggtttagattttattctaaaagatgggttgttttgtgattaccattcacatgagaatgc |
578 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
49694164 |
ttgaagagtgtaaatatttgaaaaatggtttgtctgaaactggtttagattttattctaaaagatgggttgttttgtgattaccattcacacgagaatgc |
49694065 |
T |
|
| Q |
579 |
ggaaacgtttaactttggagacaatgtaaacgaagaggctactatggagctaaacacactaagtcaagagtcaaaaagagatagttcggatttggatgat |
678 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49694064 |
ggaaacgtttaactttggagacaatgtaaacgaagaggctactatggagctaaacacagtaagtcaagagtcaaaaagagatagttcggatttggatgaa |
49693965 |
T |
|
| Q |
679 |
gatgtc |
684 |
Q |
| |
|
|||||| |
|
|
| T |
49693964 |
gatgtc |
49693959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 49694594 - 49694545
Alignment:
| Q |
25 |
gaaaccattgatacggtggaagaaacttctaatgccaacaacttattgga |
74 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49694594 |
gaaaccactgatacggtggaagaaacttctaatgccaacaacttattgga |
49694545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University