View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_low_135 (Length: 300)
Name: NF13763_low_135
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_low_135 |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 43693574 - 43693287
Alignment:
| Q |
1 |
ttcaacttatattttgcagaatgcgaggcttttagaagtgatgaaaatcattgttagggatagctcctcagagggaatgcaagagcatgaaattacagaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43693574 |
ttcaacttatattttgcagaatgcgaggcttttagaagtgatgaaaatcattgttagggatagctcctcagagggaatgcaagagcatgaaattatagaa |
43693475 |
T |
|
| Q |
101 |
aaattatccacctgtctaag---gatgtctccggatgtaaactttcgttttaatttatttaataactaggtataactgtttttcattaatttctattcta |
197 |
Q |
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|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
43693474 |
aaattatccacctgtccaaggatgatgtctccggatgtaaactttcgttttaatttatttaataactaggtataattgtttttcattaatttctattcta |
43693375 |
T |
|
| Q |
198 |
ataatataccaccattgaatgtgatggtctttagtagtatgttcaaattctagggtggactgccattgtggctagataattatattgtt |
286 |
Q |
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| T |
43693374 |
ataatataccaccattgaatgtgatggtctttagtagt-tgttcaaattctagggtggactgccattgtggctagataattattttgtt |
43693287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 3 - 286
Target Start/End: Complemental strand, 43684527 - 43684245
Alignment:
| Q |
3 |
caacttatattttgcagaatgcgaggcttttagaagtgatgaaaatcattgttagggatagctcctcagagggaatgcaagagcatgaaattacagaaaa |
102 |
Q |
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| T |
43684527 |
caacctatattttgcggaatgctaggcttttagaagtgatgaaaaccgatgttagtactacctttt---atggaatgcaaaagcataaaattatagaaaa |
43684431 |
T |
|
| Q |
103 |
attatccacctgtctaaggat--gtctccggatgtaaactttcgttttaatttatttaataactaggtataactgtttttcattaatttctattctaata |
200 |
Q |
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| T |
43684430 |
attatccacatgtccaaggatatgtctccggatgtaaacttttgttttgatttatttaataactagatctcattgtttttcattaatttctattctaata |
43684331 |
T |
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| Q |
201 |
atataccaccattgaatgtgatggtctttagtagtatgttcaaattctagggtggactgccattgtggctagataattatattgtt |
286 |
Q |
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|||| ||||| ||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
43684330 |
atatgtcaccactgaatttgatggtctttagtagcatgttcaaattctagggtgaactgccattgtggctagataattattttgtt |
43684245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 113 - 180
Target Start/End: Complemental strand, 32429372 - 32429304
Alignment:
| Q |
113 |
tgtctaaggatgtctccgg-atgtaaactttcgttttaatttatttaataactaggtataactgttttt |
180 |
Q |
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|||| |||||||||||||| ||||||||||||||||||||||||||| ||||||| ||| | ||||||| |
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| T |
32429372 |
tgtccaaggatgtctccgggatgtaaactttcgttttaatttatttagtaactagatatcattgttttt |
32429304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 32429464 - 32429424
Alignment:
| Q |
3 |
caacttatattttgcagaatgcgaggcttttagaagtgatg |
43 |
Q |
| |
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|||| ||||||||||||||||||| |||||||||||||||| |
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| T |
32429464 |
caacatatattttgcagaatgcgaagcttttagaagtgatg |
32429424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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