View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13763_low_136 (Length: 300)
Name: NF13763_low_136
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_low_136 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 16 - 276
Target Start/End: Original strand, 30960266 - 30960526
Alignment:
| Q |
16 |
tgtgtgttgtgaacaaagatgaatttcttagtgaagccatcatggttgacttttatatcatattgtcatggtttaccaagtaaaaagtgaacgatttcta |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30960266 |
tgtgtgttgtgaacaaagatgaatttcttagtgaagccatcatggttgacttttatatcatattgtcatggtttaccaagtaaaaagtgaacgatttcta |
30960365 |
T |
|
| Q |
116 |
tcgatacaacttcacgtaaaatttcactaatatagttagtacacggctagttacctaacacttgtttatcaacaacaatttcttcattctctcttaaaga |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30960366 |
tcgatacaacttcacgtaaaatttcactaatatagttagtacatggctagttacctaacacttgtttatcaacaacaatttcttcattctctcttaaaga |
30960465 |
T |
|
| Q |
216 |
tcgaagtttataagtctagaatggaaagtagtactaagattaagttttgtaactagtcgtg |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30960466 |
tcgaagtttataagtctagaatggaaagtagtactaagattaagttttgtaactagtcgtg |
30960526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 169
Target Start/End: Complemental strand, 30960546 - 30960514
Alignment:
| Q |
137 |
tttcactaatatagttagtacacggctagttac |
169 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |
|
|
| T |
30960546 |
tttcactaatatagttagtacacgactagttac |
30960514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 181 - 273
Target Start/End: Complemental strand, 38790863 - 38790770
Alignment:
| Q |
181 |
ttatcaacaacaatttcttcattctctcttaaagatcgaagtttataa-gtctagaatggaaagtagtactaagattaagttttgtaactagtc |
273 |
Q |
| |
|
||||||| |||||||||| ||| || ||||| || |||||||| || | |||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38790863 |
ttatcaataacaatttctcaattttcacttaaccattgaagtttaaaaagcctaggatggaaagtagtactaagattaagttttgtaactagtc |
38790770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University