View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_low_139 (Length: 298)
Name: NF13763_low_139
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_low_139 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 33493998 - 33493738
Alignment:
| Q |
1 |
ttgagattcgtcccactatcaaatgggacaagggcaaggctcttgaatttttgttggaatcgttaggtaagtagtactaagtactagtgagtacataatc |
100 |
Q |
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| T |
33493998 |
ttgagattcgtcccactatcaaatgggacaagggcaaggctcttgaatttttgttggaatcgttaggtaagtagtactaagtactagtgagtacataatc |
33493899 |
T |
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| Q |
101 |
atgaaaaattagcattactttgactaaattttttatattatgatgtgtcctaattagtataatgttatttatatactattctataggatacaagaactca |
200 |
Q |
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| T |
33493898 |
atgaaaaattagcattactttgactaaattttttatattatgatgtgtcctaattagtataatgttatttatatactattctataggatacaagaactca |
33493799 |
T |
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| Q |
201 |
aatgatgtattcccaatctatatcggggatgatcgaaccgatgaggatgctttcaaggtaa |
261 |
Q |
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| T |
33493798 |
aatgatgtattcccaatctatatcggggatgatcgaaccgatgaggatgctttcaaggtaa |
33493738 |
T |
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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 37979008 - 37978958
Alignment:
| Q |
3 |
gagattcgtcccactatcaaatgggacaagggcaaggctcttgaatttttg |
53 |
Q |
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| T |
37979008 |
gagattcgtcccgcaattaaatgggacaagggcaaggccctcgaatttttg |
37978958 |
T |
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