View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_low_140 (Length: 296)
Name: NF13763_low_140
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_low_140 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 4 - 213
Target Start/End: Original strand, 42560627 - 42560836
Alignment:
| Q |
4 |
gggtacattatacttacacactttactttgaacatcattaatcaggcatatactataaaaataacaaaattaaattaagaacttagaaatataacttaaa |
103 |
Q |
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| T |
42560627 |
gggtacactttacttacacactttactttgaacatcattaatcaggcatatactataaaaataacaaaattaaattaagaacttagaaatataacttaaa |
42560726 |
T |
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| Q |
104 |
tactatttgaacatcattaatcatacatgcattttcctgctccattatatatataataatttaattactttgattggtttctaggattaggaaagaaaaa |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42560727 |
tactatttgaacatcattaatcatacatgcattttcctactccattatatatataataatttaattactttgattggtttctaggattaggaaagaaaaa |
42560826 |
T |
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| Q |
204 |
agatcgagct |
213 |
Q |
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|||||||||| |
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| T |
42560827 |
agatcgagct |
42560836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 280
Target Start/End: Original strand, 42560871 - 42560903
Alignment:
| Q |
248 |
gatggagagatcaatagtagctccacaaacttt |
280 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
42560871 |
gatggagagatcaatagtagctccacaaacttt |
42560903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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