View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_low_141 (Length: 292)
Name: NF13763_low_141
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_low_141 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 12 - 271
Target Start/End: Complemental strand, 29561198 - 29560939
Alignment:
| Q |
12 |
acatcatcaggcgaaggaggcacgcaatgatttaggtgtttcatgttttaagattggtggtttgggatctgtcatgtaatatgtactatgcttagagaaa |
111 |
Q |
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| T |
29561198 |
acattatcaggcgaagaaggcacacaatgatttatgtgtttcttgttttaagattggtggtttgatatctgtcatgtaatatgtaccatgcttagagaaa |
29561099 |
T |
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| Q |
112 |
taaggccagcattctcaaaggaagataaaagtgtattgtgcatgctggcttgatatttagggtgtgtttggataaataacttattgaagagtttaatgat |
211 |
Q |
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| T |
29561098 |
taaggtcagcatcctcaaaggaagataaaagtgtatgctgtatgctggcttgatatttagggtgtgtttggataaataacttatttaagagtttaatggt |
29560999 |
T |
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| Q |
212 |
aagctctcatcatataagttcttatgaataagttgtaaattaattgtttctatagatcat |
271 |
Q |
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| T |
29560998 |
aagctctcatcatataagttcttatgaataagttgggaattaattgtttctatagttcat |
29560939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 153 - 242
Target Start/End: Complemental strand, 29557204 - 29557115
Alignment:
| Q |
153 |
atgctggcttgatatttagggtgtgtttggataaataacttattgaagagtttaatgataagctctcatcatataagttcttatgaataa |
242 |
Q |
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| T |
29557204 |
atgctgggatgatattcatggtgtgtttggataaataattcagtgaagagcttaatgttaagttcttatcatataagttgttatgaataa |
29557115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 92
Target Start/End: Complemental strand, 29557363 - 29557326
Alignment:
| Q |
55 |
tgttttaagattggtggtttgggatctgtcatgtaata |
92 |
Q |
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| T |
29557363 |
tgttataagattggtagtttgggatctgtcatgtaata |
29557326 |
T |
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