View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_low_147 (Length: 279)
Name: NF13763_low_147
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_low_147 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 6 - 263
Target Start/End: Original strand, 41042523 - 41042780
Alignment:
| Q |
6 |
agtagcaaagggaggaaacttgaacaagccaagagcaatgaatgctagtttgatggctttgaaaagtgctggagttgaaggggtgatggttgatgtttgg |
105 |
Q |
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| T |
41042523 |
agtaacaatgggaggaaacttgaacaagccaagagcaatgaatgctagtttgatggctttgaaaagtgctggagttgaaggggtgatggttgatgtttgg |
41042622 |
T |
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| Q |
106 |
tggggtttggttgaaaaagatggacctttcaagtataactgggaagcttatgctgagcttgtgcagatggtgcaattgcatggtttgaagcttcaagttg |
205 |
Q |
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| T |
41042623 |
tggggtttggttgaaaaagatggacctttcaagtataactgggaagcttatgctgagcttgtgcagatggtgcaattgcatggtttgaagcttcaagttg |
41042722 |
T |
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| Q |
206 |
ttatgtcttttcatcagtgtggaggaaatgttggagattcctgcaggtatgatataac |
263 |
Q |
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| T |
41042723 |
ttatgtcttttcatcagtgtggaggaaatgttggagattcctgcaggtatgatataac |
41042780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 134; Significance: 8e-70; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 15 - 256
Target Start/End: Complemental strand, 4365018 - 4364777
Alignment:
| Q |
15 |
gggaggaaacttgaacaagccaagagcaatgaatgctagtttgatggctttgaaaagtgctggagttgaaggggtgatggttgatgtttggtggggtttg |
114 |
Q |
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| T |
4365018 |
gggaggaaaattgaataaagcaagagcaatgaatgctagtttgatggctttgaagagtgctggtgttgaaggagtaatggttgatgcttggtggggtttg |
4364919 |
T |
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| Q |
115 |
gttgaaaaagatggacctttcaagtataactgggaagcttatgctgagcttgtgcagatggtgcaattgcatggtttgaagcttcaagttgttatgtctt |
214 |
Q |
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| T |
4364918 |
gtcgaaaaagatggtccaatgaagtataattgggaagcttatgctgaacttgttcagatggtacaaaaacatggtttgaagcttcaaattgttatgtctt |
4364819 |
T |
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| Q |
215 |
ttcatcagtgtggaggaaatgttggagattcctgcaggtatg |
256 |
Q |
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| T |
4364818 |
ttcatcaatgtggtggaaatgttggtgactcttgcaggtatg |
4364777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 15 - 256
Target Start/End: Complemental strand, 4372611 - 4372370
Alignment:
| Q |
15 |
gggaggaaacttgaacaagccaagagcaatgaatgctagtttgatggctttgaaaagtgctggagttgaaggggtgatggttgatgtttggtggggtttg |
114 |
Q |
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| T |
4372611 |
gggaggaaaattgaataaagcaagagcaatgaatgctagtttgatggctttgaagagtgctggtgttgaaggagtaatggttgatgcttggtggggtttg |
4372512 |
T |
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| Q |
115 |
gttgaaaaagatggacctttcaagtataactgggaagcttatgctgagcttgtgcagatggtgcaattgcatggtttgaagcttcaagttgttatgtctt |
214 |
Q |
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| T |
4372511 |
gtcgaaaaagatggtccaatgaagtataattgggaagcttatgctgaacttgttcagatggtacaaaaacatggtttgaagcttcaaattgttatgtctt |
4372412 |
T |
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| Q |
215 |
ttcatcagtgtggaggaaatgttggagattcctgcaggtatg |
256 |
Q |
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| T |
4372411 |
ttcatcaatgtggtggaaatgttggtgactcttgcaggtatg |
4372370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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