View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_low_149 (Length: 275)
Name: NF13763_low_149
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_low_149 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 16 - 258
Target Start/End: Complemental strand, 49733064 - 49732822
Alignment:
| Q |
16 |
ataataagcccttaaactaacaacattagggtgcctaatccttccaagaatttccatatgctgttcaaattccctcttccctgcaatctgtgcatctttc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49733064 |
ataataagcccttaaactaacaacattagggtgcctaatccttccaagaatttccatatgctgttcaaattccctcttccctgcaatctgtgcatctttc |
49732965 |
T |
|
| Q |
116 |
aatctcttcacagcaacaacatttccatcatcaagaacagctttataagcagttccaaatccacctttccctaacatttcagctgaagcacgtaacaaat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49732964 |
aatctcttcacagcaacaacatttccatcatcaagaacagctttataagcagttccaaatccacctttccctaacatttcagctgaagcacgtaacaaat |
49732865 |
T |
|
| Q |
216 |
cctcaagttcaaaccttttctcaccttcaaaaaataccattct |
258 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49732864 |
cctcaagttcaaaccttttctcaccttcaaaaaataccattct |
49732822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 113 - 256
Target Start/End: Complemental strand, 22837754 - 22837611
Alignment:
| Q |
113 |
ttcaatctcttcacagcaacaacatttccatcatcaagaacagctttataagcagttccaaatccacctttccctaacatttcagctgaagcacgtaaca |
212 |
Q |
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||||| ||||||||||| |||||| ||||||||||||||||||||||||| ||||||| || ||| ||||| |||||||| || |||||||| | || |
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| T |
22837754 |
ttcaacctcttcacagctacaacacttccatcatcaagaacagctttatagacagttcctaaggtacccttccccaacatttccgccgaagcacgaagca |
22837655 |
T |
|
| Q |
213 |
aatcctcaagttcaaaccttttctcaccttcaaaaaataccatt |
256 |
Q |
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||||||| || |||||||| ||| | ||||| ||||| |||||| |
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| T |
22837654 |
aatcctctagctcaaacctcttcaccccttcgaaaaacaccatt |
22837611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 118 - 219
Target Start/End: Original strand, 41847433 - 41847534
Alignment:
| Q |
118 |
tctcttcacagcaacaacatttccatcatcaagaacagctttataagcagttccaaatccacctttccctaacatttcagctgaagcacgtaacaaatcc |
217 |
Q |
| |
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|||||| ||||||||| | ||||||||||||||||||| ||||| ||||||| || | ||| ||||| | ||| || || ||||| |||| ||||||| |
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| T |
41847433 |
tctcttaacagcaacagtacatccatcatcaagaacagctctataaacagttcccaaactacccttcccaagcatctctgcagaagctcgtagcaaatcc |
41847532 |
T |
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| Q |
218 |
tc |
219 |
Q |
| |
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|| |
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|
| T |
41847533 |
tc |
41847534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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