View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_low_160 (Length: 259)
Name: NF13763_low_160
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_low_160 |
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| [»] scaffold0054 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 10 - 244
Target Start/End: Complemental strand, 18323351 - 18323121
Alignment:
| Q |
10 |
cacagagagattaattgctatttatttt-acgtatgtatttaatcaaataacattatagtaccacttttataaattagtaaaatatatgttttgtatcgg |
108 |
Q |
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||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| | |
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| T |
18323351 |
cacagagagattaattgctatttttttttacgtatgtatttaatcaaataacatcatagtaccacttttataaattagtaaaatatatgttctgtatcag |
18323252 |
T |
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| Q |
109 |
tcagaagaccaattgcacgatgatacgtggcctaacttacaccatcataagacttcgtggctgatggaacacaccagttcaagtgcaccgcaccgcacac |
208 |
Q |
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| T |
18323251 |
tcagaagatcaattgcacgacgatacgtggcctaacttacaccgtcataaggctctgtggctgacggaacacgccagtttaagtgcacc-----gcacac |
18323157 |
T |
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| Q |
209 |
gaatgcacccccacgcgaggatcatgctacctgtgt |
244 |
Q |
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|| ||||||||| | ||||||||||||||| ||||| |
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| T |
18323156 |
gagtgcacccccgcacgaggatcatgctacgtgtgt |
18323121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 232
Target Start/End: Complemental strand, 20148605 - 20148505
Alignment:
| Q |
133 |
acgtggcctaacttacaccatcataagacttcgtggctgatggaacacaccag-ttcaagtgcaccgcaccgcacacgaatgcacccccacgcgaggatc |
231 |
Q |
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| T |
20148605 |
acgtggcctaacttacaccgtcataagatttcgcgcctgaagaaacaccccagctttaagtgcaccacaccacccacgagtgcgcccccgcgtgaggatc |
20148506 |
T |
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| Q |
232 |
a |
232 |
Q |
| |
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| |
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| T |
20148505 |
a |
20148505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 232
Target Start/End: Original strand, 22184223 - 22184323
Alignment:
| Q |
133 |
acgtggcctaacttacaccatcataagacttcgtggctgatggaacacaccag-ttcaagtgcaccgcaccgcacacgaatgcacccccacgcgaggatc |
231 |
Q |
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||||||||||||||||||| |||||||| |||| | |||| | ||||| |||| || ||||||||| |||| | ||||| ||| ||||| || ||||||| |
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| T |
22184223 |
acgtggcctaacttacaccgtcataagatttcgcgcctgaagaaacaccccagctttaagtgcaccacaccacccacgagtgcgcccccgcgtgaggatc |
22184322 |
T |
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| Q |
232 |
a |
232 |
Q |
| |
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| T |
22184323 |
a |
22184323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 106 - 187
Target Start/End: Complemental strand, 30607245 - 30607164
Alignment:
| Q |
106 |
cggtcagaagaccaattgcacgatgatacgtggcctaacttacaccatcataagacttcgtggctgatggaacacaccagtt |
187 |
Q |
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| T |
30607245 |
cggtcataagaccaaacacacgacgacacgtggcctaacttacaccgtcataagactacgcgccttatgaaacacgccagtt |
30607164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 237
Target Start/End: Original strand, 21342108 - 21342156
Alignment:
| Q |
189 |
aagtgcaccgcaccgcacacgaatgcacccccacgcgaggatcatgcta |
237 |
Q |
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| T |
21342108 |
aagtgcaccgcaccgcacatgagtgcgtccccacgcgaggatcacgcta |
21342156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 151
Target Start/End: Complemental strand, 23493953 - 23493912
Alignment:
| Q |
110 |
cagaagaccaattgcacgatgatacgtggcctaacttacacc |
151 |
Q |
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| T |
23493953 |
cagaagaccaatcgcacgttgacacgtggcctaacttacacc |
23493912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 232
Target Start/End: Original strand, 68603 - 68703
Alignment:
| Q |
133 |
acgtggcctaacttacaccatcataagacttcgtggctgatggaacacaccag-ttcaagtgcaccgcaccgcacacgaatgcacccccacgcgaggatc |
231 |
Q |
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||||||||||||||||||| ||||||| |||| | |||| | ||||| |||| || ||||||||| |||| ||||||| | | ||||| || ||||||| |
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| T |
68603 |
acgtggcctaacttacaccgccataagatttcgcgcctgaagaaacaccccagctttaagtgcaccacaccacacacgagtacgcccccgcgagaggatc |
68702 |
T |
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| Q |
232 |
a |
232 |
Q |
| |
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| T |
68703 |
a |
68703 |
T |
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