View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13763_low_163 (Length: 255)

Name: NF13763_low_163
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13763_low_163
NF13763_low_163
[»] chr8 (1 HSPs)
chr8 (1-245)||(27294771-27295015)
[»] chr3 (9 HSPs)
chr3 (31-122)||(30987770-30987861)
chr3 (15-224)||(21939032-21939241)
chr3 (169-210)||(22036562-22036603)
chr3 (169-210)||(22117130-22117171)
chr3 (15-67)||(21932309-21932361)
chr3 (169-209)||(21947672-21947712)
chr3 (15-67)||(22029892-22029944)
chr3 (169-209)||(22106756-22106796)
chr3 (15-67)||(22188880-22188932)


Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 27294771 - 27295015
Alignment:
Q  1 tagactctggagcttatgaaggtttaggtttgtattttcaagatggagggattcagagactaaaggagctgtacgttggattctcgatggaattgagata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27294771 tagactctggagcttatgaaggtttaggtttgtattttcaagatggagggattcagagactaaaggagctgtacgttggattctcgatggaattgagata 27294870  T
Q  101 tattattatcgacaaaggagcattgcattatctgaaaaagcttcagttaggctcaattccccgatttgagaatataccgactggcatccaacacatagag 200  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  27294871 tattattatcgacgaaggagcattgccttatctgaaaaagcttcagttaggctcaattccccgacttgagaatgtaccgactggcatccaacacatagag 27294970  T
Q  201 aagcttgaagttcttcatatttggcttatgcctattgaatctgtg 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  27294971 aagcttgaagttcttcatatttggcttatgcctattgaatctgtg 27295015  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 122
Target Start/End: Complemental strand, 30987861 - 30987770
Alignment:
Q  31 tgtattttcaagatggagggattcagagactaaaggagctgtacgttggattctcgatggaattgagatatattattatcgacaaaggagca 122  Q
    ||||||||||||||||| || ||| || |||||| || |||||| ||||||  |||   ||||||| | |||||||||||||||||||||||    
T  30987861 tgtattttcaagatggatggtttccgaaactaaaagaactgtacattggatcttcggatgaattgacagatattattatcgacaaaggagca 30987770  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 224
Target Start/End: Original strand, 21939032 - 21939241
Alignment:
Q  15 tatgaaggtttaggtttgtattttcaagatggagggattcagagactaaaggagctgtacgttggattctcgatggaattgagatatattattatcgaca 114  Q
    |||||||||||||||||| ||||||| ||||||| | |||||| ||||||||| ||| | ||| ||   |  || |||||||   | |||||||||||||    
T  21939032 tatgaaggtttaggtttgcattttcatgatggagagtttcagaaactaaaggaactggaagttagaggttgcattgaattgaaggaaattattatcgaca 21939131  T
Q  115 aaggagcattgcattatctgaaaaagcttcagttaggctcaattccccgatttg-agaatataccgactggcatccaacacatagagaagcttgaagttc 213  Q
    ||||| || ||| ||  || ||||||||| ||||| |  |||  || | || || |||||||||| ||||||||  ||||| ||||||||||||||| ||    
T  21939132 aaggatcaatgccttccctaaaaaagcttaagtta-gtgcaacccctcaatctgaagaatatacctactggcattgaacacttagagaagcttgaagatc 21939230  T
Q  214 ttcatatttgg 224  Q
    |  ||||||||    
T  21939231 tctatatttgg 21939241  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 169 - 210
Target Start/End: Original strand, 22036562 - 22036603
Alignment:
Q  169 agaatataccgactggcatccaacacatagagaagcttgaag 210  Q
    |||||||||| ||||||||||||||| | |||||||||||||    
T  22036562 agaatatacccactggcatccaacacttggagaagcttgaag 22036603  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 169 - 210
Target Start/End: Original strand, 22117130 - 22117171
Alignment:
Q  169 agaatataccgactggcatccaacacatagagaagcttgaag 210  Q
    |||||||||| ||||||||||||||| | |||||||||||||    
T  22117130 agaatatacccactggcatccaacacttggagaagcttgaag 22117171  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 21932309 - 21932361
Alignment:
Q  15 tatgaaggtttaggtttgtattttcaagatggagggattcagagactaaagga 67  Q
    ||||||||||||   ||| ||||||||||||||||| |||||| |||||||||    
T  21932309 tatgaaggtttacaattgcattttcaagatggagggtttcagaaactaaagga 21932361  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 209
Target Start/End: Original strand, 21947672 - 21947712
Alignment:
Q  169 agaatataccgactggcatccaacacatagagaagcttgaa 209  Q
    |||||||||| ||||||||||||||| | ||||||||||||    
T  21947672 agaatatacccactggcatccaacacttggagaagcttgaa 21947712  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 22029892 - 22029944
Alignment:
Q  15 tatgaaggtttaggtttgtattttcaagatggagggattcagagactaaagga 67  Q
    ||||||||||||   ||| ||||||||||||||||| |||||| |||||||||    
T  22029892 tatgaaggtttacaattgcattttcaagatggagggtttcagaaactaaagga 22029944  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 209
Target Start/End: Original strand, 22106756 - 22106796
Alignment:
Q  169 agaatataccgactggcatccaacacatagagaagcttgaa 209  Q
    |||||||||| ||||||||||||||| | ||||||||||||    
T  22106756 agaatatacccactggcatccaacacttggagaagcttgaa 22106796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 22188880 - 22188932
Alignment:
Q  15 tatgaaggtttaggtttgtattttcaagatggagggattcagagactaaagga 67  Q
    ||||||||||||   ||| ||||||||||||||||| |||||| |||||||||    
T  22188880 tatgaaggtttacaattgcattttcaagatggagggtttcagaaactaaagga 22188932  T

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