View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_low_166 (Length: 245)
Name: NF13763_low_166
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_low_166 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 41302378 - 41302598
Alignment:
| Q |
1 |
aaactaaagacgaagtgtttcaaatatttcagaattttcatgccatggttcaaaaccaattttctgccaagattcatgttcttcgatcagacaatggagg |
100 |
Q |
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| T |
41302378 |
aaactaaagacgaagtgtttcaaatatttcagaattttcgtgccatggttcaaaaccaattttctgccaagattcatgttcttcgatcagacaatggagg |
41302477 |
T |
|
| Q |
101 |
ggagtttgttaatcatcgtttcaaagcatacttccgacaacatggtctttttcatgagacctcatgctcttaaaccccacagcagaacggggtttccgaa |
200 |
Q |
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|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
41302478 |
ggagttcgttaatcatcgtttcaaagcatacttccaacaacatggtctttttcatgagacctcatgctctcaaaccccacagcagaacggggtttccgaa |
41302577 |
T |
|
| Q |
201 |
cggaaaaaccatagtatctta |
221 |
Q |
| |
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|||||||| | |||||||||| |
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| T |
41302578 |
cggaaaaatcgtagtatctta |
41302598 |
T |
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