View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13763_low_172 (Length: 239)

Name: NF13763_low_172
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13763_low_172
NF13763_low_172
[»] chr5 (5 HSPs)
chr5 (18-212)||(27401961-27402151)
chr5 (32-128)||(244604-244700)
chr5 (32-128)||(29950009-29950105)
chr5 (32-128)||(29951647-29951743)
chr5 (200-232)||(27402163-27402195)
[»] chr4 (10 HSPs)
chr4 (31-204)||(19459754-19459929)
chr4 (32-128)||(15017806-15017902)
chr4 (32-128)||(15019446-15019542)
chr4 (32-128)||(9167078-9167174)
chr4 (32-185)||(19458054-19458209)
chr4 (32-113)||(13518138-13518219)
chr4 (32-128)||(39488313-39488409)
chr4 (32-79)||(19460562-19460609)
chr4 (42-138)||(24663568-24663664)
chr4 (51-138)||(21484607-21484694)
[»] chr8 (1 HSPs)
chr8 (32-125)||(8366532-8366625)
[»] chr2 (2 HSPs)
chr2 (32-125)||(22300062-22300155)
chr2 (172-212)||(24806376-24806416)
[»] chr1 (3 HSPs)
chr1 (32-125)||(24157220-24157313)
chr1 (32-127)||(36233730-36233825)
chr1 (32-125)||(20190596-20190689)
[»] chr7 (5 HSPs)
chr7 (32-125)||(9595602-9595695)
chr7 (32-125)||(9646565-9646658)
chr7 (32-125)||(7843101-7843194)
chr7 (32-113)||(9647113-9647194)
chr7 (51-113)||(9596150-9596212)
[»] scaffold0269 (1 HSPs)
scaffold0269 (32-119)||(1575-1662)
[»] chr3 (1 HSPs)
chr3 (31-79)||(2693803-2693851)
[»] scaffold0013 (1 HSPs)
scaffold0013 (172-212)||(241599-241639)


Alignment Details
Target: chr5 (Bit Score: 166; Significance: 6e-89; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 27401961 - 27402151
Alignment:
Q  18 ttttgcactaattcaattagtggctgcatttattttcattttctaagagttttagaatcaaagccatcttgtaattagcccgtataaaaagagcacaaaa 117  Q
    ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  27401961 ttttgtactaattcaattagtggctgcatttattttcattttctgagagttttagaatcaaagccatcttgtaattagcccatataaaaagagcacaaaa 27402060  T
Q  118 atgatatgaaagacagatgaagtaagttttaaaaaatcactgtgtgaattttggagctttgcttcttttttgttctaaattgaaccatgcgttga 212  Q
    ||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27402061 atgatatgaaagacagatgaagtaagttttaaaaaatcac----tgaattttggagctttgcttcttttttgttctaaattgaaccatgcgttga 27402151  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 32 - 128
Target Start/End: Complemental strand, 244700 - 244604
Alignment:
Q  32 aattagtggctgcatttattttcattttctaagagttttagaatcaaagccatcttgtaattagcccgtataaaaagagcacaaaaatgatatgaaa 128  Q
    ||||||||| |||||||  ||||||||||||||||||||||| |||||  |||| |||||| ||| | |||||| ||||||| ||||||||||||||    
T  244700 aattagtggttgcatttcctttcattttctaagagttttagagtcaaaatcatcatgtaataagctcatataaatagagcacgaaaatgatatgaaa 244604  T

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Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 32 - 128
Target Start/End: Original strand, 29950009 - 29950105
Alignment:
Q  32 aattagtggctgcatttattttcattttctaagagttttagaatcaaagccatcttgtaattagcccgtataaaaagagcacaaaaatgatatgaaa 128  Q
    ||||||||| |||||||  ||||||||||||||||||||||| |||||  |||| |||||| ||| | |||||| ||||||| ||||||||||||||    
T  29950009 aattagtggttgcatttcctttcattttctaagagttttagagtcaaaatcatcatgtaataagctcatataaatagagcacgaaaatgatatgaaa 29950105  T

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Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 32 - 128
Target Start/End: Original strand, 29951647 - 29951743
Alignment:
Q  32 aattagtggctgcatttattttcattttctaagagttttagaatcaaagccatcttgtaattagcccgtataaaaagagcacaaaaatgatatgaaa 128  Q
    ||||||||| |||||||  ||||||||||||||||||||||| |||||  |||| |||||| ||| | |||||| ||||||| ||||||||||||||    
T  29951647 aattagtggttgcatttcctttcattttctaagagttttagagtcaaaatcatcatgtaataagctcatataaatagagcacgaaaatgatatgaaa 29951743  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 232
Target Start/End: Original strand, 27402163 - 27402195
Alignment:
Q  200 aaccatgcgttgagaatttctattggctttcat 232  Q
    ||||||||||||||||||| |||||||||||||    
T  27402163 aaccatgcgttgagaatttgtattggctttcat 27402195  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 31 - 204
Target Start/End: Original strand, 19459754 - 19459929
Alignment:
Q  31 caattagtggctgcatttattttcattttctaagagttttagaatcaaagccatcttgtaattagcccgtataaaaagagcacaaaaatgatatgaaaga 130  Q
    |||||| ||| |||||||  |||||||||||||||||||||||||||||   ||| ||||||  |  | |||||| || |||| ||||||||||| |||     
T  19459754 caattaatggatgcatttcctttcattttctaagagttttagaatcaaaataatcatgtaatatgttcatataaatagtgcacgaaaatgatatgcaagg 19459853  T
Q  131 cagatgaagtaagttttaaaaaatcact--gtgtgaattttggagctttgcttcttttttgttctaaattgaacca 204  Q
     ||||||| |||| |  |||||||||||  |||||||||| |||||||||||| | | | ||||||||||||||||    
T  19459854 gagatgaattaagctaaaaaaaatcactttgtgtgaatttgggagctttgcttatctatggttctaaattgaacca 19459929  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 32 - 128
Target Start/End: Complemental strand, 15017902 - 15017806
Alignment:
Q  32 aattagtggctgcatttattttcattttctaagagttttagaatcaaagccatcttgtaattagcccgtataaaaagagcacaaaaatgatatgaaa 128  Q
    ||||||||| |||||||  ||||||||||||||||||||||| |||||  |||| |||||| ||| | |||||| ||||||| ||||||||||||||    
T  15017902 aattagtggttgcattttctttcattttctaagagttttagagtcaaaatcatcatgtaataagctcatataaatagagcacgaaaatgatatgaaa 15017806  T

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Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 32 - 128
Target Start/End: Complemental strand, 15019542 - 15019446
Alignment:
Q  32 aattagtggctgcatttattttcattttctaagagttttagaatcaaagccatcttgtaattagcccgtataaaaagagcacaaaaatgatatgaaa 128  Q
    ||||||||| |||||||  ||||||||||||||||||||||| |||||  |||| |||||| ||| | |||||| ||||||| ||||||||||||||    
T  15019542 aattagtggttgcatttcctttcattttctaagagttttagagtcaaaatcatcatgtaataagctcatataaatagagcacgaaaatgatatgaaa 15019446  T

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Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 32 - 128
Target Start/End: Original strand, 9167078 - 9167174
Alignment:
Q  32 aattagtggctgcatttattttcattttctaagagttttagaatcaaagccatcttgtaattagcccgtataaaaagagcacaaaaatgatatgaaa 128  Q
    ||||||||| || ||||  ||||||||||||||||||||||| |||||  |||| |||||| ||| | |||||| ||||||| ||||||||||||||    
T  9167078 aattagtggttggatttcctttcattttctaagagttttagagtcaaaatcatcatgtaataagctcatataaatagagcacgaaaatgatatgaaa 9167174  T

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Target: chr4; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 32 - 185
Target Start/End: Original strand, 19458054 - 19458209
Alignment:
Q  32 aattagtggctgcatttattttcattttctaagagttttagaatcaaagccatcttgtaattagcccgtataaaaagagcacaaaaatgatatgaaagac 131  Q
    ||||||||||| || ||  ||||||||||||||||| |||||||||||  |||| ||||||  || | |||||| ||||||  ||||||||||  |||      
T  19458054 aattagtggctacacttcctttcattttctaagagtgttagaatcaaaatcatcatgtaataggctcatataaatagagcatgaaaatgatatataaggg 19458153  T
Q  132 agatgaagtaagttttaaaaaatcac--tgtgtgaattttggagctttgcttcttt 185  Q
    ||||||| |||| |  ||||||| ||  ||||||||||| ||||||||||||||||    
T  19458154 agatgaattaagctaaaaaaaataactttgtgtgaatttgggagctttgcttcttt 19458209  T

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Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 32 - 113
Target Start/End: Complemental strand, 13518219 - 13518138
Alignment:
Q  32 aattagtggctgcatttattttcattttctaagagttttagaatcaaagccatcttgtaattagcccgtataaaaagagcac 113  Q
    |||||||||||||||||  ||||||||||||||||||||||| |||||  |||| |||||| ||| | |||||| |||||||    
T  13518219 aattagtggctgcatttcctttcattttctaagagttttagagtcaaaatcatcatgtaataagctcatataaatagagcac 13518138  T

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Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 128
Target Start/End: Complemental strand, 39488409 - 39488313
Alignment:
Q  32 aattagtggctgcatttattttcattttctaagagttttagaatcaaagccatcttgtaattagcccgtataaaaagagcacaaaaatgatatgaaa 128  Q
    |||||||||||||||||  ||||||||||||||||||||||| |||||  || | ||||||  || | |||| | ||||||| |||||| |||||||    
T  39488409 aattagtggctgcatttcctttcattttctaagagttttagagtcaaaatcaacatgtaatatgctcatatagatagagcacgaaaatgttatgaaa 39488313  T

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Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 79
Target Start/End: Complemental strand, 19460609 - 19460562
Alignment:
Q  32 aattagtggctgcatttattttcattttctaagagttttagaatcaaa 79  Q
    |||||||||||||||||  |||||||||| ||||||||||||||||||    
T  19460609 aattagtggctgcatttcatttcattttcaaagagttttagaatcaaa 19460562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 138
Target Start/End: Complemental strand, 24663664 - 24663568
Alignment:
Q  42 tgcatttattttcattttctaagagttttagaatcaaagccatcttgtaattagcccgtataaaaagagcacaaaaatgatatgaaagacagatgaa 138  Q
    |||||||  ||| |||||||||||||||||||||||||  |||| |||||| |   | |||||| ||||||| ||||||||| | ||| ||||||||    
T  24663664 tgcatttccttttattttctaagagttttagaatcaaaatcatcatgtaataaaatcatataaatagagcacgaaaatgatacgtaaggcagatgaa 24663568  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 138
Target Start/End: Complemental strand, 21484694 - 21484607
Alignment:
Q  51 tttcattttctaagagttttagaatcaaagccatcttgtaattagcccgtataaaaagagcacaaaaatgatatgaaagacagatgaa 138  Q
    ||||||||| |||||||||||||||||||  |||| |||||| | | | |||||| | |  |||||||||||||| ||| ||||||||    
T  21484694 tttcattttgtaagagttttagaatcaaaatcatcatgtaataaacgcatataaatacaatacaaaaatgatatgtaaggcagatgaa 21484607  T

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Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 32 - 125
Target Start/End: Original strand, 8366532 - 8366625
Alignment:
Q  32 aattagtggctgcatttattttcattttctaagagttttagaatcaaagccatcttgtaattagcccgtataaaaagagcacaaaaatgatatg 125  Q
    |||||||||||||||||  ||||||||||||||||||||||| |||||| | || |||||| ||| | |||||| ||||||| |||||||||||    
T  8366532 aattagtggctgcatttcctttcattttctaagagttttagagtcaaagtcctcatgtaataagctcatataaatagagcacgaaaatgatatg 8366625  T

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Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 32 - 125
Target Start/End: Complemental strand, 22300155 - 22300062
Alignment:
Q  32 aattagtggctgcatttattttcattttctaagagttttagaatcaaagccatcttgtaattagcccgtataaaaagagcacaaaaatgatatg 125  Q
    ||||| |||||||||||  ||||||||||||||||||||||| |||||| |||| |||||| ||| | |||||| ||||||| |||||||||||    
T  22300155 aattaatggctgcatttcctttcattttctaagagttttagagtcaaagtcatcatgtaataagctcatataaatagagcacgaaaatgatatg 22300062  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 212
Target Start/End: Complemental strand, 24806416 - 24806376
Alignment:
Q  172 agctttgcttcttttttgttctaaattgaaccatgcgttga 212  Q
    ||||||||||||||||||||||  |||||||||||| ||||    
T  24806416 agctttgcttcttttttgttctggattgaaccatgcattga 24806376  T

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Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 32 - 125
Target Start/End: Complemental strand, 24157313 - 24157220
Alignment:
Q  32 aattagtggctgcatttattttcattttctaagagttttagaatcaaagccatcttgtaattagcccgtataaaaagagcacaaaaatgatatg 125  Q
    |||||||||||||||||  ||||||||||||||||||||||| |||||  |||| |||||| ||| | |||||| ||||||| |||||||||||    
T  24157313 aattagtggctgcatttgctttcattttctaagagttttagagtcaaaatcatcatgtaataagctcatataaatagagcacgaaaatgatatg 24157220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 32 - 127
Target Start/End: Original strand, 36233730 - 36233825
Alignment:
Q  32 aattagtggctgcatttattttcattttctaagagttttagaatcaaagccatcttgtaattagcccgtataaaaagagcacaaaaatgatatgaa 127  Q
    ||||||||| |||||||  ||||||||||||||||||||||| | |||  |||| |||||| ||| | |||||| ||||||| |||||||||||||    
T  36233730 aattagtggttgcatttcctttcattttctaagagttttagagtgaaaatcatcatgtaataagctcatataaatagagcacgaaaatgatatgaa 36233825  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 32 - 125
Target Start/End: Complemental strand, 20190689 - 20190596
Alignment:
Q  32 aattagtggctgcatttattttcattttctaagagttttagaatcaaagccatcttgtaattagcccgtataaaaagagcacaaaaatgatatg 125  Q
    |||||||||||||||||  ||||||||||||||||||||||| |||||  |||| |||||| | | | |||||| ||| ||| |||||||||||    
T  20190689 aattagtggctgcatttcctttcattttctaagagttttagagtcaaaatcatcatgtaataacctcatataaatagatcacgaaaatgatatg 20190596  T

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Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 32 - 125
Target Start/End: Complemental strand, 9595695 - 9595602
Alignment:
Q  32 aattagtggctgcatttattttcattttctaagagttttagaatcaaagccatcttgtaattagcccgtataaaaagagcacaaaaatgatatg 125  Q
    |||||||||||||||||  ||||||||||||||||||||||| |||||  |||| |||||| | | | |||||| ||||||| |||||||||||    
T  9595695 aattagtggctgcatttcctttcattttctaagagttttagagtcaaaatcatcatgtaataaactcatataaatagagcacgaaaatgatatg 9595602  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 32 - 125
Target Start/End: Complemental strand, 9646658 - 9646565
Alignment:
Q  32 aattagtggctgcatttattttcattttctaagagttttagaatcaaagccatcttgtaattagcccgtataaaaagagcacaaaaatgatatg 125  Q
    |||||||||||||||||  ||||||||||||||||||||||| |||||  |||| |||||| | | | |||||| ||||||| |||||||||||    
T  9646658 aattagtggctgcatttcctttcattttctaagagttttagagtcaaaatcatcatgtaataaactcatataaatagagcacgaaaatgatatg 9646565  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 32 - 125
Target Start/End: Original strand, 7843101 - 7843194
Alignment:
Q  32 aattagtggctgcatttattttcattttctaagagttttagaatcaaagccatcttgtaattagcccgtataaaaagagcacaaaaatgatatg 125  Q
    |||||||||||||||||  |||||||||||||||||||| || |||||  |||| |||||| ||| | |||||| ||||||| |||||| ||||    
T  7843101 aattagtggctgcatttcctttcattttctaagagtttttgagtcaaaatcatcatgtaataagctcatataaatagagcacgaaaatggtatg 7843194  T

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Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 32 - 113
Target Start/End: Complemental strand, 9647194 - 9647113
Alignment:
Q  32 aattagtggctgcatttattttcattttctaagagttttagaatcaaagccatcttgtaattagcccgtataaaaagagcac 113  Q
    |||||||||||||||||  ||||||||||||||||||||||| |||||  |||| |||||| ||| | |||||| |||||||    
T  9647194 aattagtggctgcatttcctttcattttctaagagttttagagtcaaaatcatcatgtaataagctcatataaatagagcac 9647113  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 113
Target Start/End: Complemental strand, 9596212 - 9596150
Alignment:
Q  51 tttcattttctaagagttttagaatcaaagccatcttgtaattagcccgtataaaaagagcac 113  Q
    ||||||||||||||||||||||| |||||  |||| |||||| ||| | |||||| |||||||    
T  9596212 tttcattttctaagagttttagagtcaaaatcatcatgtaataagctcatataaatagagcac 9596150  T

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Target: scaffold0269 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0269
Description:

Target: scaffold0269; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 119
Target Start/End: Complemental strand, 1662 - 1575
Alignment:
Q  32 aattagtggctgcatttattttcattttctaagagttttagaatcaaagccatcttgtaattagcccgtataaaaagagcacaaaaat 119  Q
    ||||| |||||||||||  ||||||||||||||||||||||| |||||  |||| |||||| ||| | |||||| | ||||| |||||    
T  1662 aattaatggctgcatttcctttcattttctaagagttttagagtcaaaatcatcatgtaataagctcatataaatatagcacgaaaat 1575  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 2693803 - 2693851
Alignment:
Q  31 caattagtggctgcatttattttcattttctaagagttttagaatcaaa 79  Q
    |||||||||| |||||||| ||| ||||||||||||||| |||||||||    
T  2693803 caattagtggttgcatttacttttattttctaagagtttcagaatcaaa 2693851  T

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Target: scaffold0013 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 212
Target Start/End: Original strand, 241599 - 241639
Alignment:
Q  172 agctttgcttcttttttgttctaaattgaaccatgcgttga 212  Q
    |||||||||||||||| |||||  |||||||||||||||||    
T  241599 agctttgcttctttttggttctggattgaaccatgcgttga 241639  T

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