View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13763_low_177 (Length: 236)

Name: NF13763_low_177
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13763_low_177
NF13763_low_177
[»] chr3 (2 HSPs)
chr3 (1-222)||(43693714-43693935)
chr3 (36-201)||(43684701-43684860)
[»] chr5 (7 HSPs)
chr5 (47-127)||(14308337-14308417)
chr5 (57-197)||(23940395-23940532)
chr5 (56-189)||(32429672-32429802)
chr5 (57-197)||(24005203-24005340)
chr5 (73-197)||(31262139-31262260)
chr5 (148-181)||(25614012-25614045)
chr5 (57-113)||(25614077-25614133)
[»] chr1 (3 HSPs)
chr1 (54-125)||(28720317-28720388)
chr1 (149-197)||(28720409-28720457)
chr1 (43-96)||(37996826-37996879)
[»] scaffold1089 (1 HSPs)
scaffold1089 (57-194)||(860-994)
[»] scaffold1377 (1 HSPs)
scaffold1377 (73-192)||(1602-1718)
[»] chr6 (5 HSPs)
chr6 (75-125)||(7872040-7872090)
chr6 (74-194)||(14438512-14438629)
chr6 (58-109)||(14435835-14435886)
chr6 (61-97)||(7806063-7806099)
chr6 (61-97)||(10416257-10416293)


Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 43693714 - 43693935
Alignment:
Q  1 attcattataatatatatctnnnnnnncaacaatcaaaataaaaacatactaatccacaaacctttcttatgaaaagaatttgaagcttgggacaattct 100  Q
    ||||||||||||||||||||       |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43693714 attcattataatatatatctaaaaaaacaacaagcaaaataaaaacatactaatccacaaacctttcttatgaaaagaatttgaagcttgggacaattct 43693813  T
Q  101 ggagcaattctactataccatcccagctgcgaaacaatttataagaaaaccatagttcaatgtgaattaagttttgaaacacgggaatgcttttgaaggt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  43693814 ggagcaattctactataccatcccagctgcgaaacaatttataagaaaaccatagttcaatgtgaattaagttttggagcacgggaatgcttttgaaggt 43693913  T
Q  201 aacccctggtctcaggaatatg 222  Q
    ||||||||||||||||||||||    
T  43693914 aacccctggtctcaggaatatg 43693935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 36 - 201
Target Start/End: Original strand, 43684701 - 43684860
Alignment:
Q  36 aaaataaaaacatactaatccacaaacctttcttatgaaaagaatttgaagcttgggacaattctggagcaattctactataccatcccagctgcgaaac 135  Q
    |||| |||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||| | ||||||||||||| ||||||||||| |  |||     
T  43684701 aaaagaaaaacatactaatccacaaacctttctgatgataagaatttcaagcttgggacaattcagaagcaattctactacaccatcccagccgtaaaa- 43684799  T
Q  136 aatttataagaaaaccatagttcaatgtgaattaagttttgaaacacgggaatgcttttgaaggta 201  Q
          ||  ||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||    
T  43684800 -----gtagtaaaaccatagttcaatgtgaattaaattttgaaacaacggaatgcttttgaaggta 43684860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 6e-24; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 47 - 127
Target Start/End: Complemental strand, 14308417 - 14308337
Alignment:
Q  47 atactaatccacaaacctttcttatgaaaagaatttgaagcttgggacaattctggagcaattctactataccatcccagc 127  Q
    |||||| ||||||||||||| |||||||||| |||| |||| ||||||||||||||||||||||||||| |||||||||||    
T  14308417 atactactccacaaaccttttttatgaaaaggatttcaagcctgggacaattctggagcaattctactacaccatcccagc 14308337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 57 - 197
Target Start/End: Original strand, 23940395 - 23940532
Alignment:
Q  57 acaaacctttcttatgaaaagaatttgaagcttgggacaattctggagcaattctactataccatcccagctgcgaaacaatttataagaaaaccatagt 156  Q
    ||||||||| || || |||||||||||||||||||||||||||| |||||| ||||| | |||||||||||   |||| || | ||    ||||||||||    
T  23940395 acaaaccttactaataaaaagaatttgaagcttgggacaattcttgagcaaatctaccacaccatcccagccatgaaagaagtgat---taaaccatagt 23940491  T
Q  157 tcaatgtgaattaagttttgaaacacgggaatgcttttgaa 197  Q
     |||| |||||||||||||||||||| ||||||| ||||||    
T  23940492 ccaatatgaattaagttttgaaacacaggaatgcctttgaa 23940532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 56 - 189
Target Start/End: Original strand, 32429672 - 32429802
Alignment:
Q  56 cacaaacctttcttatgaaaagaatttgaagcttgggacaattctggagcaattctactataccatcccagctgcgaaacaatttataagaaaaccatag 155  Q
    ||||||||||||||||||||| ||||||||||||||||||||   |||||||||||||||| |||||||| |  ||||| |    |  | ||||||||||    
T  32429672 cacaaacctttcttatgaaaaaaatttgaagcttgggacaatgtcggagcaattctactatgccatcccaaccacgaaaaa---cactaaaaaaccatag 32429768  T
Q  156 ttcaatgtgaattaagttttgaaacacgggaatg 189  Q
    ||||||   |||||||||||||||||| ||||||    
T  32429769 ttcaatacaaattaagttttgaaacaccggaatg 32429802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 57 - 197
Target Start/End: Original strand, 24005203 - 24005340
Alignment:
Q  57 acaaacctttcttatgaaaagaatttgaagcttgggacaattctggagcaattctactataccatcccagctgcgaaacaatttataagaaaaccatagt 156  Q
    |||||||||||| || ||||||||||||||||||||||| ||||||||||  ||||||| ||||| |||||   |||| ||    |   |||||||||||    
T  24005203 acaaacctttctaataaaaagaatttgaagcttgggacagttctggagcatatctactacaccattccagccatgaaagaa---ctccaaaaaccatagt 24005299  T
Q  157 tcaatgtgaattaagttttgaaacacgggaatgcttttgaa 197  Q
    | ||| | |||||||||||||||||| ||||||||||||||    
T  24005300 tgaatattaattaagttttgaaacacaggaatgcttttgaa 24005340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 73 - 197
Target Start/End: Complemental strand, 31262260 - 31262139
Alignment:
Q  73 aaaagaatttgaagcttgggacaattctggagcaattctactataccatcccagctgcgaaacaatttataagaaaaccatagttcaatgtgaattaagt 172  Q
    ||||||| ||||||||| || |||| ||||||||||||||| | |||||||||||   |||  || | ||   | |||||||||| |||||||||||| |    
T  31262260 aaaagaacttgaagctttgggcaatgctggagcaattctaccacaccatcccagccatgaatgaagtcat---acaaccatagtttaatgtgaattaaat 31262164  T
Q  173 tttgaaacacgggaatgcttttgaa 197  Q
    |||||||||  |||||| |||||||    
T  31262163 tttgaaacaatggaatggttttgaa 31262139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 181
Target Start/End: Complemental strand, 25614045 - 25614012
Alignment:
Q  148 aaccatagttcaatgtgaattaagttttgaaaca 181  Q
    |||||||||| |||||||||||||||||||||||    
T  25614045 aaccatagtttaatgtgaattaagttttgaaaca 25614012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 113
Target Start/End: Complemental strand, 25614133 - 25614077
Alignment:
Q  57 acaaacctttcttatgaaaagaatttgaagcttgggacaattctggagcaattctac 113  Q
    ||||||| |||| |||||||||| ||||||||| || || | |||||||||||||||    
T  25614133 acaaacccttctgatgaaaagaacttgaagctttgggcattgctggagcaattctac 25614077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 54 - 125
Target Start/End: Original strand, 28720317 - 28720388
Alignment:
Q  54 tccacaaacctttcttatgaaaagaatttgaagcttgggacaattctggagcaattctactataccatccca 125  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||| | ||||||||||| |||||||||    
T  28720317 tccacaaacctttctaatgaaaacaatttgaagcttgggacaattctgaaacaattctactacaccatccca 28720388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 197
Target Start/End: Original strand, 28720409 - 28720457
Alignment:
Q  149 accatagttcaatgtgaattaagttttgaaacacgggaatgcttttgaa 197  Q
    ||||||||||||| |||||||||||||||||||  ||||||| ||||||    
T  28720409 accatagttcaatatgaattaagttttgaaacaacggaatgcctttgaa 28720457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 96
Target Start/End: Original strand, 37996826 - 37996879
Alignment:
Q  43 aaacatactaatccacaaacctttcttatgaaaagaatttgaagcttgggacaa 96  Q
    |||||||||| || |||||||||||| ||  |||||||||||||||||| ||||    
T  37996826 aaacatactactcaacaaacctttctaatagaaagaatttgaagcttggaacaa 37996879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1089 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold1089
Description:

Target: scaffold1089; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 57 - 194
Target Start/End: Original strand, 860 - 994
Alignment:
Q  57 acaaacctttcttatgaaaagaatttgaagcttgggacaattctggagcaattctactataccatcccagctgcgaaacaatttataagaaaaccatagt 156  Q
    |||||||||||| || |||| |||||||||||||||||| |  |||||||||| |||||| ||||||||||   |||| ||     || |||||  ||||    
T  860 acaaacctttctaataaaaacaatttgaagcttgggacattgttggagcaattgtactatgccatcccagccatgaaagaa---gcaataaaactgtagt 956  T
Q  157 tcaatgtgaattaagttttgaaacacgggaatgctttt 194  Q
    | |||||||||||||||| ||||||| |||| ||||||    
T  957 ttaatgtgaattaagtttcgaaacaccggaaagctttt 994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1377 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold1377
Description:

Target: scaffold1377; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 192
Target Start/End: Original strand, 1602 - 1718
Alignment:
Q  73 aaaagaatttgaagcttgggacaattctggagcaattctactataccatcccagctgcgaaacaatttataagaaaaccatagttcaatgtgaattaagt 172  Q
    |||||| ||||||||||||||||||  |||||||||| || ||| |||||||||| | |||| || | ||   |||||||||  | ||||||||||||||    
T  1602 aaaagagtttgaagcttgggacaatgttggagcaattgtaatatgccatcccagccgtgaaagaagtcat---aaaaccataacttaatgtgaattaagt 1698  T
Q  173 tttgaaacacgggaatgctt 192  Q
    |  ||||||| |||||||||    
T  1699 tcggaaacactggaatgctt 1718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 75 - 125
Target Start/End: Complemental strand, 7872090 - 7872040
Alignment:
Q  75 aagaatttgaagcttgggacaattctggagcaattctactataccatccca 125  Q
    |||||||||||||||||||||||   ||||||||||| |||||||||||||    
T  7872090 aagaatttgaagcttgggacaatggcggagcaattctcctataccatccca 7872040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 74 - 194
Target Start/End: Original strand, 14438512 - 14438629
Alignment:
Q  74 aaagaatttgaagcttgggacaattctggagcaattctactataccatcccagctgcgaaacaatttataagaaaaccatagttcaatgtgaattaagtt 173  Q
    ||||||||||||||||||||||||  ||||| |||| |||||| ||||||||||   |||| ||     || |||||  ||||| |||||||||||||||    
T  14438512 aaagaatttgaagcttgggacaatgttggagaaattgtactatgccatcccagccaggaaagaa---ccaataaaactgtagtttaatgtgaattaagtt 14438608  T
Q  174 ttgaaacacgggaatgctttt 194  Q
    ||||||||  |||| ||||||    
T  14438609 ttgaaacatcggaaagctttt 14438629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 109
Target Start/End: Original strand, 14435835 - 14435886
Alignment:
Q  58 caaacctttcttatgaaaagaatttgaagcttgggacaattctggagcaatt 109  Q
    ||||||||| | |||||||||||||||||| |||||||||  ||||||||||    
T  14435835 caaacctttttaatgaaaagaatttgaagcatgggacaatgttggagcaatt 14435886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 97
Target Start/End: Original strand, 7806063 - 7806099
Alignment:
Q  61 acctttcttatgaaaagaatttgaagcttgggacaat 97  Q
    |||||| | ||||||||||||||||||||||||||||    
T  7806063 acctttttaatgaaaagaatttgaagcttgggacaat 7806099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 97
Target Start/End: Complemental strand, 10416293 - 10416257
Alignment:
Q  61 acctttcttatgaaaagaatttgaagcttgggacaat 97  Q
    |||||| | ||||||||||||||||||||||||||||    
T  10416293 acctttttaatgaaaagaatttgaagcttgggacaat 10416257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University