View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13763_low_180 (Length: 235)

Name: NF13763_low_180
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13763_low_180
NF13763_low_180
[»] chr7 (4 HSPs)
chr7 (1-82)||(1553167-1553247)
chr7 (86-129)||(1545570-1545613)
chr7 (1-75)||(1537599-1537677)
chr7 (86-131)||(12469043-12469088)
[»] chr3 (3 HSPs)
chr3 (129-209)||(9103179-9103259)
chr3 (86-131)||(53589050-53589096)
chr3 (87-131)||(45279860-45279904)
[»] chr6 (2 HSPs)
chr6 (142-220)||(32450575-32450653)
chr6 (86-131)||(17352817-17352862)
[»] chr5 (1 HSPs)
chr5 (126-212)||(40687335-40687421)
[»] chr4 (2 HSPs)
chr4 (86-131)||(16647168-16647213)
chr4 (86-131)||(24924987-24925032)
[»] chr8 (3 HSPs)
chr8 (86-131)||(22454653-22454698)
chr8 (86-131)||(32352298-32352343)
chr8 (86-131)||(32368959-32369004)


Alignment Details
Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 1553247 - 1553167
Alignment:
Q  1 aaataattatgaatgattatgacaatgaaattaagtaaaatgcattgaactcaaaaaagataataaatttaggtaggttgaa 82  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||    
T  1553247 aaataattatgaatgattatgacaatgaaattaagtaaaatgcattgaactc-aaaaggataataaattcaggtaggttgaa 1553167  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 86 - 129
Target Start/End: Complemental strand, 1545613 - 1545570
Alignment:
Q  86 ctataagtgatttgcgaccctttatcctaatgaaaaactactat 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  1545613 ctataagtgatttgcgaccctttatcctaatgaaaaactactat 1545570  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 1537599 - 1537677
Alignment:
Q  1 aaataattatgaatgattatgacaatgaaatt----aagtaaaatgcattgaactcaaaaaagataataaatttaggta 75  Q
    |||||||||||||| |||||||||||||||||    | |||||||||||||||||||||||  |||||||||| |||||    
T  1537599 aaataattatgaattattatgacaatgaaattgtatatgtaaaatgcattgaactcaaaaattataataaattcaggta 1537677  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 131
Target Start/End: Original strand, 12469043 - 12469088
Alignment:
Q  86 ctataagtgatttgcgaccctttatcctaatgaaaaactactatat 131  Q
    |||||||||||||||||||| || |||| |||||||||||||||||    
T  12469043 ctataagtgatttgcgacccattttccttatgaaaaactactatat 12469088  T

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Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 129 - 209
Target Start/End: Complemental strand, 9103259 - 9103179
Alignment:
Q  129 tatcttgacatacctaacgtgctgtaaaagaaatagggcatggatatttgcttatggtcttaggaaaattctgctgcaaga 209  Q
    |||||||||||||| |||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||    
T  9103259 tatcttgacatacccaacgtgctgtaaaagaaacagggcatggagatttgcttctggtcttaggaaaattctgctgcaaga 9103179  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 131
Target Start/End: Complemental strand, 53589096 - 53589050
Alignment:
Q  86 ctataagtgatttgcgaccctttat-cctaatgaaaaactactatat 131  Q
    ||||||||||||||||||| ||| | |||||||||||||||||||||    
T  53589096 ctataagtgatttgcgaccattttttcctaatgaaaaactactatat 53589050  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 131
Target Start/End: Complemental strand, 45279904 - 45279860
Alignment:
Q  87 tataagtgatttgcgaccctttatcctaatgaaaaactactatat 131  Q
    ||||||||||||| |||||||| | || |||||||||||||||||    
T  45279904 tataagtgatttgtgacccttttttcttatgaaaaactactatat 45279860  T

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Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 142 - 220
Target Start/End: Original strand, 32450575 - 32450653
Alignment:
Q  142 ctaacgtgctgtaaaagaaatagggcatggatatttgcttatggtcttaggaaaattctgctgcaagatatgtgccaaa 220  Q
    |||||||||||||||||||| |||||||||| |||||||| || ||||||||||||||| |||||||||||||||||||    
T  32450575 ctaacgtgctgtaaaagaaacagggcatggagatttgcttctgatcttaggaaaattctactgcaagatatgtgccaaa 32450653  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 131
Target Start/End: Original strand, 17352817 - 17352862
Alignment:
Q  86 ctataagtgatttgcgaccctttatcctaatgaaaaactactatat 131  Q
    ||||||||||||||||||||||| |||| | | |||||||||||||    
T  17352817 ctataagtgatttgcgaccctttttccttagggaaaactactatat 17352862  T

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Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 126 - 212
Target Start/End: Complemental strand, 40687421 - 40687335
Alignment:
Q  126 ctatatcttgacatacctaacgtgctgtaaaagaaatagggcatggatatttgcttatggtcttaggaaaattctgctgcaagatat 212  Q
    |||||||||||||||||||||||| |||||||| ||||||||| ||| |||||||| ||||||||||||||||||| |||| |||||    
T  40687421 ctatatcttgacatacctaacgtgatgtaaaaggaatagggcacggagatttgcttctggtcttaggaaaattctgatgcatgatat 40687335  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 131
Target Start/End: Original strand, 16647168 - 16647213
Alignment:
Q  86 ctataagtgatttgcgaccctttatcctaatgaaaaactactatat 131  Q
    ||||||||||||||||||||||| | || |||||||||||||||||    
T  16647168 ctataagtgatttgcgacccttttttcttatgaaaaactactatat 16647213  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 131
Target Start/End: Original strand, 24924987 - 24925032
Alignment:
Q  86 ctataagtgatttgcgaccctttatcctaatgaaaaactactatat 131  Q
    ||||||||||||||||| ||||| | | ||||||||||||||||||    
T  24924987 ctataagtgatttgcgaaccttttttcaaatgaaaaactactatat 24925032  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 131
Target Start/End: Complemental strand, 22454698 - 22454653
Alignment:
Q  86 ctataagtgatttgcgaccctttatcctaatgaaaaactactatat 131  Q
    |||||||||||||||||||| || | || |||||||||||||||||    
T  22454698 ctataagtgatttgcgacccatttttcttatgaaaaactactatat 22454653  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 131
Target Start/End: Original strand, 32352298 - 32352343
Alignment:
Q  86 ctataagtgatttgcgaccctttatcctaatgaaaaactactatat 131  Q
    |||||||||||||||||||| || | || |||||||||||||||||    
T  32352298 ctataagtgatttgcgacccgtttttcttatgaaaaactactatat 32352343  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 131
Target Start/End: Original strand, 32368959 - 32369004
Alignment:
Q  86 ctataagtgatttgcgaccctttatcctaatgaaaaactactatat 131  Q
    |||||||||||||||||||| || | || |||||||||||||||||    
T  32368959 ctataagtgatttgcgacccgtttttcttatgaaaaactactatat 32369004  T

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