View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_low_181 (Length: 234)
Name: NF13763_low_181
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_low_181 |
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Alignment Details
Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 13 - 218
Target Start/End: Original strand, 9911304 - 9911505
Alignment:
| Q |
13 |
atcatcatcattgaggttgttgataaatgcaatgaagagagtcgaaattaaatatcattagtggtgaagatttaatt-tgggccatgggtaggttagggt |
111 |
Q |
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| T |
9911304 |
atcataatcattgaggttgttgataaatgcaatgaagagagtcgaaag-----atcattagtggtaaagatttaaatctgggccatgggtaggttagggt |
9911398 |
T |
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| Q |
112 |
ttgaggactatgttggtcctctatctcttctcctccaaaactatcgcaaccgtggtagtggctcgagcagtggtaatggctaacattgatatggatatgg |
211 |
Q |
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| T |
9911399 |
ttgaggactatgttggtcctctatctcttctcctccaaaactatcgcaacggtgctagtggctcgagcagtggcaatggccaacattgatatggatatgg |
9911498 |
T |
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| Q |
212 |
ttaaaat |
218 |
Q |
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||||||| |
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| T |
9911499 |
ttaaaat |
9911505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 7 - 162
Target Start/End: Original strand, 9921375 - 9921525
Alignment:
| Q |
7 |
atggacatcatcatcattgaggttgttgataaatgcaatgaagagagtcgaaattaaatatcattagtggtgaagatttaatttgggccatgggtaggtt |
106 |
Q |
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|||| |||||||| || ||||| |||||| ||||||||||||||||||||||| |||||||| ||||||||| |||| |||||||||||||||| |
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| T |
9921375 |
atgggcatcatcaccactgaggctgttgagaaatgcaatgaagagagtcgaaag-----atcattagcggtgaagatataatacgggccatgggtaggtt |
9921469 |
T |
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| Q |
107 |
agggtttgaggactatgttggtcctctatctcttctcctccaaaactatcgcaacc |
162 |
Q |
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| T |
9921470 |
agggtttgaggactatgttggtcctctatctcttctcctccaaaactatcgcaacc |
9921525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 134
Target Start/End: Complemental strand, 9634572 - 9634519
Alignment:
| Q |
81 |
gatttaatttgggccatgggtaggttagggtttgaggactatgttggtcctcta |
134 |
Q |
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|||||||| ||||| |||| ||||||||| ||||| ||||||||||| |||||| |
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| T |
9634572 |
gatttaatatgggcaatggataggttaggctttgatgactatgttggccctcta |
9634519 |
T |
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