View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_low_182 (Length: 233)
Name: NF13763_low_182
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_low_182 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 54615912 - 54616128
Alignment:
| Q |
1 |
tagtttggtttctggctgagaaaaataaaatcaagttttagtcttatatctgaataatcatgtatgatgcaggttagaagggaaaagattagtgagagaa |
100 |
Q |
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| T |
54615912 |
tagtttggtttctggctgagaaaaataaaatcaagttttagtcttatatctgaataattatgtatgatgcaggttagaagggaaaagattagtgagagaa |
54616011 |
T |
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| Q |
101 |
tgaagtatttgcaagatttagtacctggatgcaacaaaattacaggaaaagctggaatgcttgatgaaatcattaactatgttcagtctcttcaaaaaca |
200 |
Q |
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| T |
54616012 |
tgaagtatttgcaagatttagtaccaggatgcaacaaaattacaggaaaagctggaatgcttgatgaaatcattaactatgttcagtctcttcaaaaaca |
54616111 |
T |
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| Q |
201 |
agttggggtaattagtt |
217 |
Q |
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| T |
54616112 |
agttgaggtaattagtt |
54616128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 68 - 203
Target Start/End: Original strand, 26484393 - 26484528
Alignment:
| Q |
68 |
tgcaggttagaagggaaaagattagtgagagaatgaagtatttgcaagatttagtacctggatgcaacaaaattacaggaaaagctggaatgcttgatga |
167 |
Q |
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| T |
26484393 |
tgcaggttagaagggaaaaaataagcgaaaggatgaagtatttgcaagatttagtaccaggatgcaacaaaattgcaggcaaagctggaatgcttgatga |
26484492 |
T |
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| Q |
168 |
aatcattaactatgttcagtctcttcaaaaacaagt |
203 |
Q |
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| T |
26484493 |
aattattaactatgttcagtctcttcaaagacaagt |
26484528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 27329879 - 27329932
Alignment:
| Q |
157 |
atgcttgatgaaatcattaactatgttcagtctcttcaaaaacaagttggggta |
210 |
Q |
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| T |
27329879 |
atgctagatgaaatcattaattatgtacagtctcttcagcaacaagttgaggta |
27329932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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