View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13763_low_189 (Length: 227)
Name: NF13763_low_189
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_low_189 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 36296087 - 36295868
Alignment:
| Q |
7 |
tagaagataaattcctaattcatctatcaattcctatgtgaatcaatcatatcatagtcagaatataattttgatacactgtgagtgcaaaaggttgtac |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36296087 |
tagaagataaattcctaattcatctatcaattcctatgtgaatcaatcatatcatagtcagaatataattttgatacactgtgagtgcaaaaggttgtac |
36295988 |
T |
|
| Q |
107 |
actgtcaacaaatcactaccaattaaacatgctagaaaggaatatcatagtacacctaataaagactttctttctatagtattatgataagaatttaatt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36295987 |
actgtcaacaaatcactaccaattaaacatgctagaaaggaatatcatagtacacctaataaagactttctttctatagtattatgataagaatttaatt |
36295888 |
T |
|
| Q |
207 |
catatacactgtcgatgtaaa |
227 |
Q |
| |
|
|||| |||||||||||||||| |
|
|
| T |
36295887 |
cata-acactgtcgatgtaaa |
36295868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 128
Target Start/End: Original strand, 16979586 - 16979642
Alignment:
| Q |
72 |
taattttgatacactgtgagtgcaaaaggttgtacactgtcaacaaatcactaccaa |
128 |
Q |
| |
|
||||||||||||||||| |||| |||| | | ||||||||||||||||||| ||||| |
|
|
| T |
16979586 |
taattttgatacactgtcagtgtaaaaagatttacactgtcaacaaatcacaaccaa |
16979642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University