View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_low_190 (Length: 226)
Name: NF13763_low_190
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_low_190 |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 33890442 - 33890226
Alignment:
| Q |
1 |
cttgtcacaattatatcagccaggttttggtcaaatagattattaattgtctccaatgcactattatcatcttcatcccttagttctgcccacatatcaa |
100 |
Q |
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| T |
33890442 |
cttgtcacaattatatcagcaaggttttggtcaaccagattattaattgtctccaatgcactattatcatcttcatcccttagttctgcacacatatcaa |
33890343 |
T |
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| Q |
101 |
taagtgcagcagctgggatcctctggttttcaggaaataagcccaagtccctaaaacactccatggacttagaatccaacacaactaagctctcttgtag |
200 |
Q |
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| T |
33890342 |
ttagagcagcagctgggatcctctggttttcaggaaataagcccaagtccctaaaacactccatggacttagaatccaacacatctaagctctcttctag |
33890243 |
T |
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| Q |
201 |
acaataacgcacgtcct |
217 |
Q |
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| T |
33890242 |
acaagaaagcacgtcct |
33890226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 66 - 217
Target Start/End: Complemental strand, 33868265 - 33868114
Alignment:
| Q |
66 |
atcatcttcatcccttagttctgcccacatatcaataagtgcagcagctgggatcctctggttttcaggaaataagcccaagtccctaaaacactccatg |
165 |
Q |
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| T |
33868265 |
atcatcatcattccttagttcagcccacatatcaataagggcagcagcaggaatcctttgatcttcaggaaataagccaaggtccctaaaacactccatg |
33868166 |
T |
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| Q |
166 |
gacttagaatccaacacaactaagctctcttgtagacaataacgcacgtcct |
217 |
Q |
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| T |
33868165 |
gacataggatccaaaacatctaagctcttttggagacaagaaagcacgtcct |
33868114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 139
Target Start/End: Original strand, 6738040 - 6738097
Alignment:
| Q |
82 |
agttctgcccacatatcaataagtgcagcagctgggatcctctggttttcaggaaata |
139 |
Q |
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| T |
6738040 |
agttctgcccacatatcaatgaggacagtaacagggatcctctggtcttcaggaaata |
6738097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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