View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_low_195 (Length: 220)
Name: NF13763_low_195
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_low_195 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 6271946 - 6271744
Alignment:
| Q |
1 |
tcgggtaagtaattagtactgattgccattctatcaatcagattacgttcataggattcatctatacataacccttgagaaagccttgttttaacactta |
100 |
Q |
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| T |
6271946 |
tcgggtaagtaattagtactgattgccattctatcaatcagattacgttcataggattcatctatacttaacccttgagaaagccttgttttaacactta |
6271847 |
T |
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| Q |
101 |
accaaaacatttcattttgatctcgcaacgaagcgccaatcactttaagagctagtggaagatttccacattcagccacaacctgtacataacacatcac |
200 |
Q |
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| T |
6271846 |
accaaaacatttcattttgatctcgcaacgaagcgccaatcactttaagagctagtggaagatttccacattcagccacaacctgtacataacacatcac |
6271747 |
T |
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| Q |
201 |
ttt |
203 |
Q |
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||| |
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| T |
6271746 |
ttt |
6271744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 89 - 186
Target Start/End: Complemental strand, 6263176 - 6263079
Alignment:
| Q |
89 |
ttttaacacttaaccaaaacatttcattttgatctcgcaacgaagcgccaatcactttaagagctagtggaagatttccacattcagccacaacctgt |
186 |
Q |
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||||||||||| ||||||||||||| |||||||| ||| ||||| ||||||||||||||||||| |||||||||| |||| ||| |||||||||| |
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| T |
6263176 |
ttttaacacttgcccaaaacatttcaggttgatctctcaatgaagctccaatcactttaagagctaatggaagattttcacactcactcacaacctgt |
6263079 |
T |
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