View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_low_196 (Length: 220)
Name: NF13763_low_196
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_low_196 |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 3 - 213
Target Start/End: Complemental strand, 9911290 - 9911080
Alignment:
| Q |
3 |
aaacacacttttgtgttgatgccttagcatcttgagatatttttgcgtatgatggaagagcacgttgcatgattcttgtcatatttctaacgggaagacg |
102 |
Q |
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| T |
9911290 |
aaacacacatttgtgttgatgccttagcatcttgagatatttttgcgtatgatggaagagcacgttgcatgattcttgtcatatttctaacaggaagacg |
9911191 |
T |
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| Q |
103 |
cagttcctcattccttgttggactccttacctataaagggactaaatccaaaaagaagcacatagttaagcaatttacataaaaataattaacataggag |
202 |
Q |
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| T |
9911190 |
caattcctcattttttgttggactccttacctgcaaagggactaaatccaaaacgaagcacatagttatgtaatttgcataaaaataattaacataggag |
9911091 |
T |
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| Q |
203 |
tatcacacaga |
213 |
Q |
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||||||||||| |
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| T |
9911090 |
tatcacacaga |
9911080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 13 - 124
Target Start/End: Complemental strand, 9921356 - 9921245
Alignment:
| Q |
13 |
ttgtgttgatgccttagcatcttgagatatttttgcgtatgatggaagagcacgttgcatgattcttgtcatatttctaacgggaagacgcagttcctca |
112 |
Q |
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|||||||| |||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||| | |||||||| || ||||||| |
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| T |
9921356 |
ttgtgttgttgccttggcatcttgagatatttttgcgtacaatggaagagcacgccgcatgattcttgtcaaatttcggatgggaagacacaattcctca |
9921257 |
T |
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| Q |
113 |
ttccttgttgga |
124 |
Q |
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| T |
9921256 |
ttttttgttgga |
9921245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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