View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_low_203 (Length: 208)
Name: NF13763_low_203
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_low_203 |
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| [»] scaffold0425 (2 HSPs) |
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Alignment Details
Target: scaffold0425 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 16 - 190
Target Start/End: Complemental strand, 14184 - 14010
Alignment:
| Q |
16 |
aaaatagaatggtttcaggtcacatataagtggtcaggaacagcggcattcttctggtcgtgtgtgagaggagtggttgtgccattcatttggtcacgaa |
115 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
14184 |
aaaatagaatggtttcaggtcacatgtaagtggtcaggaacagcggcattcttctggtcgtgtgtgagaggagtggttgtgccattcatttggtcacaaa |
14085 |
T |
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| Q |
116 |
tgagaatggatggcaacaaaatagcatggtttcaggtcacatgtaagtggtcaggaacgccatcggagcataaac |
190 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
14084 |
tgagaatggatggcaacaaaatagcatggtttcaggtcacatgtaagtggtcaggaacgccatcggagcgtaaac |
14010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 130 - 173
Target Start/End: Complemental strand, 14187 - 14144
Alignment:
| Q |
130 |
aacaaaatagcatggtttcaggtcacatgtaagtggtcaggaac |
173 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
14187 |
aacaaaatagaatggtttcaggtcacatgtaagtggtcaggaac |
14144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 151; Significance: 4e-80; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 16 - 190
Target Start/End: Complemental strand, 6851752 - 6851578
Alignment:
| Q |
16 |
aaaatagaatggtttcaggtcacatataagtggtcaggaacagcggcattcttctggtcgtgtgtgagaggagtggttgtgccattcatttggtcacgaa |
115 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||| || |
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| T |
6851752 |
aaaatagaatggtttcaggtcacatgtaagtggtcaggaacagcagcattcttctggtcgtgtgtgagaggagtggtggtgccattcatctggtcacaaa |
6851653 |
T |
|
| Q |
116 |
tgagaatggatggcaacaaaatagcatggtttcaggtcacatgtaagtggtcaggaacgccatcggagcataaac |
190 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
6851652 |
tgagaatggatggcaacaaaatagcatggtttcaggtcacatgtaactggtcaggaacgccatcggagcataaac |
6851578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 54 - 163
Target Start/End: Complemental strand, 6724703 - 6724594
Alignment:
| Q |
54 |
aacagcggcattcttctggtcgtgtgtgagaggagtggttgtgccattcatttggtcacgaatgagaatggatggcaacaaaatagcatggtttcaggtc |
153 |
Q |
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||||| |||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||| |
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| T |
6724703 |
aacagaggcattcttctggttgtgcgtgagaggagtggttgtgccattcatctggtcacgaatgagattggatggcaacaaaatcacatggtttcaggtc |
6724604 |
T |
|
| Q |
154 |
acatgtaagt |
163 |
Q |
| |
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|||||||||| |
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| T |
6724603 |
acatgtaagt |
6724594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 66 - 167
Target Start/End: Original strand, 6897466 - 6897567
Alignment:
| Q |
66 |
cttctggtcgtgtgtgagaggagtggttgtgccattcatttggtcacgaatgagaatggatggcaacaaaatagcatggtttcaggtcacatgtaagtgg |
165 |
Q |
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|||||||| ||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| || |
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| T |
6897466 |
cttctggttgtgtgtgagagcagtggtcatgccattcatttggtcacgagtgagaatggatggcaacaaaagagcatggtttcaggtcacatgtaagcgg |
6897565 |
T |
|
| Q |
166 |
tc |
167 |
Q |
| |
|
|| |
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|
| T |
6897566 |
tc |
6897567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 66 - 169
Target Start/End: Original strand, 6879894 - 6879997
Alignment:
| Q |
66 |
cttctggtcgtgtgtgagaggagtggttgtgccattcatttggtcacgaatgagaatggatggcaacaaaatagcatggtttcaggtcacatgtaagtgg |
165 |
Q |
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||||| || |||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |
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| T |
6879894 |
cttctagttgtgtgtaagagcagtggtcatgccattcatttggtcacgaatgagaatggatggcaacaaaagagcatggtttcaggtcacatgtaagcgg |
6879993 |
T |
|
| Q |
166 |
tcag |
169 |
Q |
| |
|
|||| |
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|
| T |
6879994 |
tcag |
6879997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 67 - 161
Target Start/End: Original strand, 6166277 - 6166371
Alignment:
| Q |
67 |
ttctggtcgtgtgtgagaggagtggttgtgccattcatttggtcacgaatgagaatggatggcaacaaaatagcatggtttcaggtcacatgtaa |
161 |
Q |
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||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
6166277 |
ttctggttgtgtgtgagagcggtggtcatgccattcatttggtcacgaatgagaatggatggcaacaaaagatcatggtttcaggtcacatgtaa |
6166371 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 89 - 187
Target Start/End: Complemental strand, 6593979 - 6593881
Alignment:
| Q |
89 |
tggttgtgccattcatttggtcacgaatgagaatggatggcaacaaaatagcatggtttcaggtcacatgtaagtggtcaggaacgccatcggagcata |
187 |
Q |
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|||||||||||||||| |||||| |||||||| || ||||||| ||||| ||||||||||||||||||||||||||||||||||| | || |||||||| |
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| T |
6593979 |
tggttgtgccattcatctggtcatgaatgagattgaatggcaaaaaaatcgcatggtttcaggtcacatgtaagtggtcaggaacacaattggagcata |
6593881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 70 - 162
Target Start/End: Original strand, 6242704 - 6242796
Alignment:
| Q |
70 |
tggtcgtgtgtgagaggagtggttgtgccattcatttggtcacgaatgagaatggatggcaacaaaatagcatggtttcaggtcacatgtaag |
162 |
Q |
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|||| ||||||||||| |||||| |||||||| ||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||| |
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| T |
6242704 |
tggttgtgtgtgagagcagtggtcatgccattcgtttggtcacgaatgagaatggatcgcaacaagagagcatggtttcaggtcacatgtaag |
6242796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 95 - 178
Target Start/End: Original strand, 6235454 - 6235537
Alignment:
| Q |
95 |
tgccattcatttggtcacgaatgagaatggatggcaacaaaatagcatggtttcaggtcacatgtaagtggtcaggaacgccat |
178 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| || | |||||||||||||||||||| |||||| |||||||| |
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| T |
6235454 |
tgccattcatttggtcatgaatgagaatggatggcaacaaaagagaacggtttcaggtcacatgtaagcggtcagaaacgccat |
6235537 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 77 - 162
Target Start/End: Original strand, 6914478 - 6914561
Alignment:
| Q |
77 |
gtgtgagaggagtggttgtgccattcatttggtcacgaatgagaatggatggcaacaaaatagcatggtttcaggtcacatgtaag |
162 |
Q |
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|
|||| |||| |||||| ||||||||||| |||||||||||| |||||||||||| | || ||||||||||||||||||||||||| |
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| T |
6914478 |
gtgtaagagcagtggtcgtgccattcatctggtcacgaatgggaatggatggcacc--aacagcatggtttcaggtcacatgtaag |
6914561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 54 - 155
Target Start/End: Original strand, 6256588 - 6256689
Alignment:
| Q |
54 |
aacagcggcattcttctggtcgtgtgtgagaggagtggttgtgccattcatttggtcacgaatgagaatggatggcaacaaaatagcatggtttcaggtc |
153 |
Q |
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||||||| ||| |||||||| ||| |||||| ||||| ||||||| || |||||| |||||| |||||||| |||||||| |||||||||||||||| |
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| T |
6256588 |
aacagcgacatccttctggttgtgcatgagagcggtggtcatgccattgatctggtcatgaatgataatggatgccaacaaaagagcatggtttcaggtc |
6256687 |
T |
|
| Q |
154 |
ac |
155 |
Q |
| |
|
|| |
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|
| T |
6256688 |
ac |
6256689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 130 - 173
Target Start/End: Complemental strand, 6851755 - 6851712
Alignment:
| Q |
130 |
aacaaaatagcatggtttcaggtcacatgtaagtggtcaggaac |
173 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
6851755 |
aacaaaatagaatggtttcaggtcacatgtaagtggtcaggaac |
6851712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 57
Target Start/End: Complemental strand, 6593927 - 6593894
Alignment:
| Q |
24 |
atggtttcaggtcacatataagtggtcaggaaca |
57 |
Q |
| |
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||||||||||||||||| |||||||||||||||| |
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|
| T |
6593927 |
atggtttcaggtcacatgtaagtggtcaggaaca |
6593894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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