View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13763_low_205 (Length: 204)

Name: NF13763_low_205
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13763_low_205
NF13763_low_205
[»] chr7 (6 HSPs)
chr7 (80-181)||(40143875-40143976)
chr7 (80-180)||(4034149-4034249)
chr7 (91-165)||(37451030-37451104)
chr7 (98-181)||(39294862-39294945)
chr7 (80-169)||(3741402-3741491)
chr7 (98-172)||(33803861-33803935)
[»] chr8 (8 HSPs)
chr8 (80-183)||(15738737-15738840)
chr8 (80-183)||(35162644-35162747)
chr8 (98-183)||(42183522-42183608)
chr8 (98-164)||(4323380-4323446)
chr8 (98-169)||(1218645-1218716)
chr8 (142-181)||(39870869-39870908)
chr8 (103-157)||(5912383-5912437)
chr8 (142-183)||(20669601-20669642)
[»] chr4 (17 HSPs)
chr4 (80-183)||(43501763-43501866)
chr4 (82-181)||(51243762-51243861)
chr4 (88-172)||(52790374-52790458)
chr4 (81-181)||(36554485-36554585)
chr4 (80-168)||(36046104-36046192)
chr4 (13-81)||(43502568-43502636)
chr4 (88-169)||(54704650-54704731)
chr4 (98-165)||(35198548-35198615)
chr4 (80-169)||(54807986-54808075)
chr4 (83-166)||(33983820-33983903)
chr4 (98-169)||(47020968-47021039)
chr4 (80-169)||(52031692-52031781)
chr4 (98-172)||(45042160-45042234)
chr4 (101-183)||(778653-778735)
chr4 (98-165)||(37693622-37693689)
chr4 (142-181)||(40361739-40361778)
chr4 (91-167)||(1939339-1939415)
[»] chr3 (8 HSPs)
chr3 (80-167)||(41650883-41650970)
chr3 (83-181)||(49499705-49499803)
chr3 (89-172)||(2451865-2451942)
chr3 (113-182)||(49304045-49304115)
chr3 (142-183)||(52562779-52562820)
chr3 (113-169)||(23030605-23030660)
chr3 (126-183)||(49741225-49741282)
chr3 (142-181)||(4040878-4040917)
[»] chr1 (8 HSPs)
chr1 (80-183)||(7013793-7013896)
chr1 (80-183)||(43137622-43137725)
chr1 (91-181)||(10309503-10309593)
chr1 (80-161)||(33685617-33685698)
chr1 (98-170)||(29401281-29401353)
chr1 (88-154)||(15400033-15400099)
chr1 (126-169)||(30859491-30859534)
chr1 (115-164)||(45049450-45049500)
[»] chr6 (2 HSPs)
chr6 (80-170)||(11599906-11599996)
chr6 (83-127)||(30633486-30633530)
[»] chr2 (12 HSPs)
chr2 (80-181)||(6729604-6729705)
chr2 (80-170)||(35150556-35150646)
chr2 (80-165)||(1888920-1889005)
chr2 (88-180)||(34618972-34619064)
chr2 (83-183)||(21084666-21084766)
chr2 (83-179)||(40643327-40643422)
chr2 (88-172)||(41191391-41191474)
chr2 (126-181)||(5289817-5289872)
chr2 (126-181)||(37058102-37058157)
chr2 (83-137)||(33675565-33675619)
chr2 (142-179)||(33710848-33710885)
chr2 (93-169)||(19380195-19380271)
[»] chr5 (11 HSPs)
chr5 (88-172)||(34954867-34954951)
chr5 (89-170)||(18171157-18171238)
chr5 (91-183)||(7661217-7661309)
chr5 (101-181)||(40031749-40031829)
chr5 (91-154)||(18171224-18171287)
chr5 (80-136)||(1080941-1080997)
chr5 (91-154)||(7661297-7661359)
chr5 (126-183)||(2787663-2787720)
chr5 (142-183)||(25868567-25868608)
chr5 (126-180)||(10533794-10533848)
chr5 (91-169)||(20882961-20883039)
[»] scaffold0051 (1 HSPs)
scaffold0051 (80-182)||(21028-21130)


Alignment Details
Target: chr7 (Bit Score: 94; Significance: 4e-46; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 80 - 181
Target Start/End: Complemental strand, 40143976 - 40143875
Alignment:
Q  80 gttcgcattagtttacacttgcgccacttaacatgcgcaacgctatttaacttgcgcacaagtttacacttgcgctagttaactagcgcagggatatttt 179  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40143976 gttcgcaatagtttacacttgtgccacttaacatgcgcaacgctatttaacttgcgcacaagtttacacttgcgctagttaactagcgcagggatatttt 40143877  T
Q  180 gg 181  Q
    ||    
T  40143876 gg 40143875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 80 - 180
Target Start/End: Complemental strand, 4034249 - 4034149
Alignment:
Q  80 gttcgcattagtttacacttgcgccacttaacatgcgcaacgctatttaacttgcgcacaagtttacacttgcgctagttaactagcgcagggatatttt 179  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| | |||||||||||||| |||| ||||||    
T  4034249 gttcgcactagtttacacttgcgccacttaacatgcgcaacgctacttaacttgcacacaagtttacacttacactagttaactagcgtaggggtatttt 4034150  T
Q  180 g 180  Q
    |    
T  4034149 g 4034149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 91 - 165
Target Start/End: Original strand, 37451030 - 37451104
Alignment:
Q  91 tttacacttgcgccacttaacatgcgcaacgctatttaacttgcgcacaagtttacacttgcgctagttaactag 165  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  37451030 tttacacttgcgccacttaacatgcgcaacgctacttaacttgcgcacaaatttacacttgcgctagttaactag 37451104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 98 - 181
Target Start/End: Original strand, 39294862 - 39294945
Alignment:
Q  98 ttgcgccacttaacatgcgcaacgctatttaacttgcgcacaagtttacacttgcgctagttaactagcgcagggatattttgg 181  Q
    |||||||||||||| ||||||||| || ||||||||||||| ||||||||| |||||||||||||||||||||||  |||||||    
T  39294862 ttgcgccacttaacgtgcgcaacgttacttaacttgcgcactagtttacacgtgcgctagttaactagcgcaggggcattttgg 39294945  T

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Target: chr7; HSP #5
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 80 - 169
Target Start/End: Complemental strand, 3741491 - 3741402
Alignment:
Q  80 gttcgcattagtttacacttgcgccacttaacatgcgcaacgctatttaacttgcgcacaagtttacacttgcgctagttaactagcgca 169  Q
    ||||||| ||||| |||||| |||||||||||||| |||| |||| ||||||| ||||||||||| |||||||||||||||||| |||||    
T  3741491 gttcgcactagttcacacttacgccacttaacatgtgcaaagctacttaacttacgcacaagtttgcacttgcgctagttaactggcgca 3741402  T

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Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 98 - 172
Target Start/End: Original strand, 33803861 - 33803935
Alignment:
Q  98 ttgcgccacttaacatgcgcaacgctatttaacttgcgcacaagtttacacttgcgctagttaactagcgcaggg 172  Q
    ||||||||| |||| ||||||||| || |||||||||| || ||||| ||||||||||| |||||||||||||||    
T  33803861 ttgcgccacataacttgcgcaacgttacttaacttgcgtactagtttccacttgcgctacttaactagcgcaggg 33803935  T

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Target: chr8 (Bit Score: 84; Significance: 4e-40; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 80 - 183
Target Start/End: Complemental strand, 15738840 - 15738737
Alignment:
Q  80 gttcgcattagtttacacttgcgccacttaacatgcgcaacgctatttaacttgcgcacaagtttacacttgcgctagttaactagcgcagggatatttt 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||| ||||||||||||||||||||| |||||    
T  15738840 gttcgcattagtttacacttgcgccacttaacatgcgcaacgctacttaatttacgcacaagtttacacttgtgctagttaactagcgcagggacatttt 15738741  T
Q  180 ggac 183  Q
    ||||    
T  15738740 ggac 15738737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 80 - 183
Target Start/End: Original strand, 35162644 - 35162747
Alignment:
Q  80 gttcgcattagtttacacttgcgccacttaacatgcgcaacgctatttaacttgcgcacaagtttacacttgcgctagttaactagcgcagggatatttt 179  Q
    ||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| || |||||    
T  35162644 gttcgcactagtttacacttacgccacttaacatgcgcaacgctacttaacttgcgcacaagtttacacttgcgctggttaactagcgcagagacatttt 35162743  T
Q  180 ggac 183  Q
    ||||    
T  35162744 ggac 35162747  T

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Target: chr8; HSP #3
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 98 - 183
Target Start/End: Original strand, 42183522 - 42183608
Alignment:
Q  98 ttgcgccacttaacatgcgcaacgctatttaacttgcgcacaag-tttacacttgcgctagttaactagcgcagggatattttggac 183  Q
    |||||||||||||| |||||||||||| ||||||||||||| || |||||||||||||||||||||||||||| ||| |||||||||    
T  42183522 ttgcgccacttaacgtgcgcaacgctagttaacttgcgcactaggtttacacttgcgctagttaactagcgcatggacattttggac 42183608  T

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Target: chr8; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 98 - 164
Target Start/End: Original strand, 4323380 - 4323446
Alignment:
Q  98 ttgcgccacttaacatgcgcaacgctatttaacttgcgcacaagtttacacttgcgctagttaacta 164  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||| | ||||||||||||||||    
T  4323380 ttgcgccacttgacatgcgcaacgctacttaacttgcgcacaagtttatatttgcgctagttaacta 4323446  T

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Target: chr8; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 98 - 169
Target Start/End: Original strand, 1218645 - 1218716
Alignment:
Q  98 ttgcgccacttaacatgcgcaacgctatttaacttgcgcacaagtttacacttgcgctagttaactagcgca 169  Q
    |||||||||||||| ||| ||| |||| |||||||||  || ||||||||||||||||||||||||||||||    
T  1218645 ttgcgccacttaacgtgcacaaagctacttaacttgcatactagtttacacttgcgctagttaactagcgca 1218716  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 142 - 181
Target Start/End: Complemental strand, 39870908 - 39870869
Alignment:
Q  142 tttacacttgcgctagttaactagcgcagggatattttgg 181  Q
    |||||||||||| ||||||||||||||| |||||||||||    
T  39870908 tttacacttgcgttagttaactagcgcaaggatattttgg 39870869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 157
Target Start/End: Complemental strand, 5912437 - 5912383
Alignment:
Q  103 ccacttaacatgcgcaacgctatttaacttgcgcacaagtttacacttgcgctag 157  Q
    |||||||||  || |||||||| ||||||||||||| |||||||||||| |||||    
T  5912437 ccacttaactagcacaacgctacttaacttgcgcactagtttacacttgtgctag 5912383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 142 - 183
Target Start/End: Complemental strand, 20669642 - 20669601
Alignment:
Q  142 tttacacttgcgctagttaactagcgcagggatattttggac 183  Q
    ||||||||||||||||||||||| |||| || ||||||||||    
T  20669642 tttacacttgcgctagttaactaacgcatgggtattttggac 20669601  T

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Target: chr4 (Bit Score: 84; Significance: 4e-40; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 80 - 183
Target Start/End: Complemental strand, 43501866 - 43501763
Alignment:
Q  80 gttcgcattagtttacacttgcgccacttaacatgcgcaacgctatttaacttgcgcacaagtttacacttgcgctagttaactagcgcagggatatttt 179  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  43501866 gttcgcattagtttacagttgcgccgcttaacatgcgcaacgctacttaacttgcgcacaagtttacacttgcgctagttaactagcgcaggggcatttt 43501767  T
Q  180 ggac 183  Q
    ||||    
T  43501766 ggac 43501763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 82 - 181
Target Start/End: Original strand, 51243762 - 51243861
Alignment:
Q  82 tcgcattagtttacacttgcgccacttaacatgcgcaacgctatttaacttgcgcacaagtttacacttgcgctagttaactagcgcagggatattttgg 181  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  51243762 tcgcactagtttacacttgcgccatttaacatgcgcaacgctatttaacttgcgcacaagtttacacttgcgctagttaactagcgcagggccattttgg 51243861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 88 - 172
Target Start/End: Original strand, 52790374 - 52790458
Alignment:
Q  88 tagtttacacttgcgccacttaacatgcgcaacgctatttaacttgcgcacaagtttacacttgcgctagttaactagcgcaggg 172  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  52790374 tagtttacacttgcgccacttaacatgcgcaacgctacttaacttgcgcacaagtttacacttgcgctagttaactagcgcaggg 52790458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 81 - 181
Target Start/End: Original strand, 36554485 - 36554585
Alignment:
Q  81 ttcgcattagtttacacttgcgccacttaacatgcgcaacgctatttaacttgcgcacaagtttacacttgcgctagttaactagcgcagggatattttg 180  Q
    |||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||| |||||||||||||||||||||  ||||||    
T  36554485 ttcgcactagtttacacttgcgccacttaacatgcgcaacgctacttaatttgcgcataagtttacacttacgctagttaactagcgcaggggcattttg 36554584  T
Q  181 g 181  Q
    |    
T  36554585 g 36554585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 80 - 168
Target Start/End: Complemental strand, 36046192 - 36046104
Alignment:
Q  80 gttcgcattagtttacacttgcgccacttaacatgcgcaacgctatttaacttgcgcacaagtttacacttgcgctagttaactagcgc 168  Q
    ||||||| |||||||||||||||||||||||||| |||||||||  |||| ||||||||||||||||||||||||||||||||||||||    
T  36046192 gttcgcactagtttacacttgcgccacttaacatacgcaacgctgcttaatttgcgcacaagtttacacttgcgctagttaactagcgc 36046104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 43502636 - 43502568
Alignment:
Q  13 gtgagatgaagtaatatgtgaggtgtgctgtgctcacaaggacatactttattgctatctttccttggt 81  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43502636 gtgaaatgaaggaatatgtgaggtgtgctgtgctcacaaggacatactttattgctatctttccttggt 43502568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 88 - 169
Target Start/End: Original strand, 54704650 - 54704731
Alignment:
Q  88 tagtttacacttgcgccacttaacatgcgcaacgctatttaacttgcgcacaagtttacacttgcgctagttaactagcgca 169  Q
    ||||||||| ||| ||||||||||||||||||||||| |||| |||||||||||||||||||||| ||| ||||||||||||    
T  54704650 tagtttacatttgtgccacttaacatgcgcaacgctacttaatttgcgcacaagtttacacttgcactaattaactagcgca 54704731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 98 - 165
Target Start/End: Complemental strand, 35198615 - 35198548
Alignment:
Q  98 ttgcgccacttaacatgcgcaacgctatttaacttgcgcacaagtttacacttgcgctagttaactag 165  Q
    ||||||||||||||||| |||||||||||||||||||  |||||||||||||||||||||||||||||    
T  35198615 ttgcgccacttaacatgtgcaacgctatttaacttgcatacaagtttacacttgcgctagttaactag 35198548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 80 - 169
Target Start/End: Complemental strand, 54808075 - 54807986
Alignment:
Q  80 gttcgcattagtttacacttgcgccacttaacatgcgcaacgctatttaacttgcgcacaagtttacacttgcgctagttaactagcgca 169  Q
    ||||||| || ||||||| |||||||||||||||| ||||||| | ||||| ||||||||| |||||||||| |||||||||||||||||    
T  54808075 gttcgcactaatttacacctgcgccacttaacatgtgcaacgccacttaacatgcgcacaaatttacacttgtgctagttaactagcgca 54807986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 83 - 166
Target Start/End: Complemental strand, 33983903 - 33983820
Alignment:
Q  83 cgcattagtttacacttgcgccacttaacatgcgcaacgctatttaacttgcgcacaagtttacacttgcgctagttaactagc 166  Q
    |||| |||||||||||||||||||||||| |||||||  ||| | ||||||||||| |||||||||||| ||||||||||||||    
T  33983903 cgcactagtttacacttgcgccacttaacgtgcgcaagactactaaacttgcgcactagtttacacttgtgctagttaactagc 33983820  T

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Target: chr4; HSP #11
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 98 - 169
Target Start/End: Original strand, 47020968 - 47021039
Alignment:
Q  98 ttgcgccacttaacatgcgcaacgctatttaacttgcgcacaagtttacacttgcgctagttaactagcgca 169  Q
    ||||||||||||||||||||||||||| ||||||||| ||| ||||| || |||||||||||||||||||||    
T  47020968 ttgcgccacttaacatgcgcaacgctacttaacttgcacactagttttcaattgcgctagttaactagcgca 47021039  T

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Target: chr4; HSP #12
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 80 - 169
Target Start/End: Complemental strand, 52031781 - 52031692
Alignment:
Q  80 gttcgcattagtttacacttgcgccacttaacatgcgcaacgctatttaacttgcgcacaagtttacacttgcgctagttaactagcgca 169  Q
    ||||||| |||||||||||   ||||||||| |||||||||| || |||||||| ||||||||||||||||||| |||||||||| ||||    
T  52031781 gttcgcactagtttacactcttgccacttaatatgcgcaacgttacttaacttgtgcacaagtttacacttgcgttagttaactaacgca 52031692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 98 - 172
Target Start/End: Complemental strand, 45042234 - 45042160
Alignment:
Q  98 ttgcgccacttaacatgcgcaacgctatttaacttgcgcacaagtttacacttgcgctagttaactagcgcaggg 172  Q
    |||||||||||||| || ||||||||| ||||||||| ||| |||||||||  ||||||||||||||||||||||    
T  45042234 ttgcgccacttaacgtgtgcaacgctacttaacttgcacactagtttacacacgcgctagttaactagcgcaggg 45042160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 101 - 183
Target Start/End: Complemental strand, 778735 - 778653
Alignment:
Q  101 cgccacttaacatgcgcaacgctatttaacttgcgcacaagtttacacttgcgctagttaactagcgcagggatattttggac 183  Q
    ||||||||||| ||||||||| || ||||||||| ||| | ||||||||||||||||| |||||| |||||  ||||||||||    
T  778735 cgccacttaacgtgcgcaacgttacttaacttgcacactaatttacacttgcgctagtaaactagtgcaggtgtattttggac 778653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 165
Target Start/End: Complemental strand, 37693689 - 37693622
Alignment:
Q  98 ttgcgccacttaacatgcgcaacgctatttaacttgcgcacaagtttacacttgcgctagttaactag 165  Q
    |||||||||||||| ||||| |||||| ||||| ||||||| |||| |||  ||||||||||||||||    
T  37693689 ttgcgccacttaacttgcgctacgctacttaacatgcgcaccagttaacatgtgcgctagttaactag 37693622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 142 - 181
Target Start/End: Original strand, 40361739 - 40361778
Alignment:
Q  142 tttacacttgcgctagttaactagcgcagggatattttgg 181  Q
    ||||||| | ||||||||||||||||||||||||||||||    
T  40361739 tttacacgtacgctagttaactagcgcagggatattttgg 40361778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 167
Target Start/End: Original strand, 1939339 - 1939415
Alignment:
Q  91 tttacacttgcgccacttaacatgcgcaacgctatttaacttgcgcacaagtttacacttgcgctagttaactagcg 167  Q
    ||||||||||||| ||||||| || ||| || || |||||| |||||    |||||||||||| |||||||||||||    
T  1939339 tttacacttgcgcaacttaacttgtgcagcgttagttaactagcgcatgcatttacacttgcgttagttaactagcg 1939415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 80 - 167
Target Start/End: Original strand, 41650883 - 41650970
Alignment:
Q  80 gttcgcattagtttacacttgcgccacttaacatgcgcaacgctatttaacttgcgcacaagtttacacttgcgctagttaactagcg 167  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  41650883 gttcgcactagtttacacttgcgccacttaacatgcgcaacgctacttaacttgcgcacaagtttacacttgcgctagttaactagcg 41650970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 83 - 181
Target Start/End: Complemental strand, 49499803 - 49499705
Alignment:
Q  83 cgcattagtttacacttgcgccacttaacatgcgcaacgctatttaacttgcgcacaagtttacacttgcgctagttaactagcgcagggatattttgg 181  Q
    |||| ||||||||||||| |||||||||| ||||||| |||| ||||||||||||| ||||||||||||| |||||||||||||||||||  |||||||    
T  49499803 cgcactagtttacacttgtgccacttaacgtgcgcaatgctacttaacttgcgcactagtttacacttgcactagttaactagcgcaggggcattttgg 49499705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 89 - 172
Target Start/End: Original strand, 2451865 - 2451942
Alignment:
Q  89 agtttacacttgcgccacttaacatgcgcaacgctatttaacttgcgcacaagtttacacttgcgctagttaactagcgcaggg 172  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||      |||||||||||||||| |||||||    
T  2451865 agtttacacttgcgccacttaacatgcgcaacgctacttaacttgcgcacaagt------ttgcgctagttaactaacgcaggg 2451942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 113 - 182
Target Start/End: Original strand, 49304045 - 49304115
Alignment:
Q  113 tgcgcaacgctatttaacttgcgcacaag-tttacacttgcgctagttaactagcgcagggatattttgga 182  Q
    |||||||||||| ||||||||||||| || |||||||||||||| ||||||||||||| ||  ||||||||    
T  49304045 tgcgcaacgctacttaacttgcgcactaggtttacacttgcgctggttaactagcgcatgggcattttgga 49304115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 183
Target Start/End: Original strand, 52562779 - 52562820
Alignment:
Q  142 tttacacttgcgctagttaactagcgcagggatattttggac 183  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  52562779 tttacacttgcgctagttaactagcgcaggggtattttggac 52562820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 113 - 169
Target Start/End: Original strand, 23030605 - 23030660
Alignment:
Q  113 tgcgcaacgctatttaacttgcgcacaagtttacacttgcgctagttaactagcgca 169  Q
    |||||||||||| ||||||||||||||||||| |||||| ||||||||| |||||||    
T  23030605 tgcgcaacgctacttaacttgcgcacaagttt-cacttgtgctagttaattagcgca 23030660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 183
Target Start/End: Complemental strand, 49741282 - 49741225
Alignment:
Q  126 ttaacttgcgcacaagtttacacttgcgctagttaactagcgcagggatattttggac 183  Q
    ||||| ||||||||| |||||||||||||||||||||||| | |||  ||||||||||    
T  49741282 ttaacatgcgcacaaatttacacttgcgctagttaactagagtaggattattttggac 49741225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 142 - 181
Target Start/End: Complemental strand, 4040917 - 4040878
Alignment:
Q  142 tttacacttgcgctagttaactagcgcagggatattttgg 181  Q
    |||||||||||| ||||||| |||||||||||||||||||    
T  4040917 tttacacttgcgttagttaattagcgcagggatattttgg 4040878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 2e-35; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 80 - 183
Target Start/End: Complemental strand, 7013896 - 7013793
Alignment:
Q  80 gttcgcattagtttacacttgcgccacttaacatgcgcaacgctatttaacttgcgcacaagtttacacttgcgctagttaactagcgcagggatatttt 179  Q
    ||||||||||||||||||||| |||||||||||||||| |||||  |||| |||||||||||||||||| |||||||||||||||||||||||| |||||    
T  7013896 gttcgcattagtttacacttgtgccacttaacatgcgccacgctgcttaagttgcgcacaagtttacacgtgcgctagttaactagcgcagggacatttt 7013797  T
Q  180 ggac 183  Q
    ||||    
T  7013796 ggac 7013793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 80 - 183
Target Start/End: Complemental strand, 43137725 - 43137622
Alignment:
Q  80 gttcgcattagtttacacttgcgccacttaacatgcgcaacgctatttaacttgcgcacaagtttacacttgcgctagttaactagcgcagggatatttt 179  Q
    ||||||| ||||||||||||||| ||||||||||| ||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  43137725 gttcgcactagtttacacttgcgtcacttaacatgtgcaacgctacttaatttgcgcataagtttacacttgcgctagttaactagcgcagggctatttt 43137626  T
Q  180 ggac 183  Q
    ||||    
T  43137625 ggac 43137622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 91 - 181
Target Start/End: Original strand, 10309503 - 10309593
Alignment:
Q  91 tttacacttgcgccacttaacatgcgcaacgctatttaacttgcgcacaagtttacacttgcgctagttaactagcgcagggatattttgg 181  Q
    ||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||| |||||||||||||||||||||||  |||||||    
T  10309503 tttacacttgcgccacttaacatgcgcaacgctacctaacttgcgcgcaagtttacacgtgcgctagttaactagcgcaggggcattttgg 10309593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 80 - 161
Target Start/End: Complemental strand, 33685698 - 33685617
Alignment:
Q  80 gttcgcattagtttacacttgcgccacttaacatgcgcaacgctatttaacttgcgcacaagtttacacttgcgctagttaa 161  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||    
T  33685698 gttcgcactagtttacacttgcgccacttaacatgtgcaacgctatttaacttgcgcataagtttacacttgcgttagttaa 33685617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 98 - 170
Target Start/End: Original strand, 29401281 - 29401353
Alignment:
Q  98 ttgcgccacttaacatgcgcaacgctatttaacttgcgcacaagtttacacttgcgctagttaactagcgcag 170  Q
    ||||||||||||||||| |||| ||||||||| ||||||||||||||||||||| |||||||||||| |||||    
T  29401281 ttgcgccacttaacatgtgcaatgctatttaatttgcgcacaagtttacacttgtgctagttaactaacgcag 29401353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 88 - 154
Target Start/End: Original strand, 15400033 - 15400099
Alignment:
Q  88 tagtttacacttgcgccacttaacatgcgcaacgctatttaacttgcgcacaagtttacacttgcgc 154  Q
    |||||||||||||||  ||||||  |||||||||||| ||||||||||||| |||||||||||||||    
T  15400033 tagtttacacttgcgttacttaatgtgcgcaacgctacttaacttgcgcactagtttacacttgcgc 15400099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 126 - 169
Target Start/End: Original strand, 30859491 - 30859534
Alignment:
Q  126 ttaacttgcgcacaagtttacacttgcgctagttaactagcgca 169  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    
T  30859491 ttaacttgcgcactagtttacacttgcgctagttaactagcgca 30859534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 115 - 164
Target Start/End: Complemental strand, 45049500 - 45049450
Alignment:
Q  115 cgcaacgctatttaacttgcgcacaag-tttacacttgcgctagttaacta 164  Q
    |||||||||| ||||||||||||| || |||||||||||||||||||||||    
T  45049500 cgcaacgctacttaacttgcgcactaggtttacacttgcgctagttaacta 45049450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 80 - 170
Target Start/End: Original strand, 11599906 - 11599996
Alignment:
Q  80 gttcgcattagtttacacttgcgccacttaacatgcgcaacgctatttaacttgcgcacaagtttacacttgcgctagttaactagcgcag 170  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  11599906 gttcgcactagtttacatttgcgccacttaacatgcgcaacgctacttaacttgcgcacaagtttacacttacgctagttaactagcgcag 11599996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 127
Target Start/End: Complemental strand, 30633530 - 30633486
Alignment:
Q  83 cgcattagtttacacttgcgccacttaacatgcgcaacgctattt 127  Q
    |||| ||||||||||||||  |||||||| |||||||||||||||    
T  30633530 cgcactagtttacacttgcatcacttaacgtgcgcaacgctattt 30633486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 4e-34; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 80 - 181
Target Start/End: Original strand, 6729604 - 6729705
Alignment:
Q  80 gttcgcattagtttacacttgcgccacttaacatgcgcaacgctatttaacttgcgcacaagtttacacttgcgctagttaactagcgcagggatatttt 179  Q
    ||||||| |||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||| ||||||||||||||||||  |||||    
T  6729604 gttcgcactagtttacacttgcgccacttaacatgcgccacgctacttaacttgcacacaagtttacacttgcgatagttaactagcgcaggggcatttt 6729703  T
Q  180 gg 181  Q
    ||    
T  6729704 gg 6729705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 80 - 170
Target Start/End: Complemental strand, 35150646 - 35150556
Alignment:
Q  80 gttcgcattagtttacacttgcgccacttaacatgcgcaacgctatttaacttgcgcacaagtttacacttgcgctagttaactagcgcag 170  Q
    ||||||| ||||||||| ||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  35150646 gttcgcactagtttacaattgtgccacttaacatgcgcaacgctacttaacttgcgcagaagtttacacttgcgctagttaactagcgcag 35150556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 80 - 165
Target Start/End: Original strand, 1888920 - 1889005
Alignment:
Q  80 gttcgcattagtttacacttgcgccacttaacatgcgcaacgctatttaacttgcgcacaagtttacacttgcgctagttaactag 165  Q
    ||||||| | |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||    
T  1888920 gttcgcactggtttacacttgcgccacttaacatgcgctacactatttaacttgcgcacaagtttacacttgcgctaattaactag 1889005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 88 - 180
Target Start/End: Complemental strand, 34619064 - 34618972
Alignment:
Q  88 tagtttacacttgcgccacttaacatgcgcaacgctatttaacttgcgcacaagtttacacttgcgctagttaactagcgcagggatattttg 180  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||| ||| |||||||||| |||| |||||||    
T  34619064 tagtttacacttgcgctacttaacatgcgcaacgctacttaacttgcgcataagtttacacttgcactaattaactagcgtaggggtattttg 34618972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 83 - 183
Target Start/End: Original strand, 21084666 - 21084766
Alignment:
Q  83 cgcattagtttacacttgcgccacttaacatgcgcaacgctatttaacttgcgcacaagtttacacttgcgctagttaactagcgcagggatattttgga 182  Q
    |||| |||||||||||||||||| ||||| |||||||||| | ||||||||||||| |||||||||||||||||||||| ||| ||||||  ||||||||    
T  21084666 cgcactagtttacacttgcgccatttaacgtgcgcaacgccacttaacttgcgcactagtttacacttgcgctagttaagtagtgcaggggcattttgga 21084765  T
Q  183 c 183  Q
    |    
T  21084766 c 21084766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 83 - 179
Target Start/End: Original strand, 40643327 - 40643422
Alignment:
Q  83 cgcattagtttacacttgcgccacttaacatgcgcaacgctatttaacttgcgcacaagtttacacttgcgctagttaactagcgcagggatatttt 179  Q
    |||| ||||||||||| |||||||||||| ||||| |||||| |||||||| |||  |||||||||||||||||||||||||||||| ||| |||||    
T  40643327 cgcactagtttacact-gcgccacttaacgtgcgcgacgctagttaacttgtgcattagtttacacttgcgctagttaactagcgcatggacatttt 40643422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 88 - 172
Target Start/End: Complemental strand, 41191474 - 41191391
Alignment:
Q  88 tagtttacacttgcgccacttaacatgcgcaacgctatttaacttgcgcacaagtttacacttgcgctagttaactagcgcaggg 172  Q
    ||||||||||||| ||||||||||||| ||||||||| |||| |||||||| || ||| |||||||||||||||||||| |||||    
T  41191474 tagtttacacttgagccacttaacatgtgcaacgctacttaatttgcgcac-aggttatacttgcgctagttaactagcacaggg 41191391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 181
Target Start/End: Complemental strand, 5289872 - 5289817
Alignment:
Q  126 ttaacttgcgcacaagtttacacttgcgctagttaactagcgcagggatattttgg 181  Q
    ||||||||  ||| ||||||||||||||||||||||||| ||||||| ||||||||    
T  5289872 ttaacttgtccactagtttacacttgcgctagttaactaacgcaggggtattttgg 5289817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 181
Target Start/End: Original strand, 37058102 - 37058157
Alignment:
Q  126 ttaacttgcgcacaagtttacacttgcgctagttaactagcgcagggatattttgg 181  Q
    ||||| ||||||| |||||||||||||||||||||| ||||||||||  |||||||    
T  37058102 ttaacgtgcgcactagtttacacttgcgctagttaattagcgcaggggcattttgg 37058157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 137
Target Start/End: Original strand, 33675565 - 33675619
Alignment:
Q  83 cgcattagtttacacttgcgccacttaacatgcgcaacgctatttaacttgcgca 137  Q
    |||| ||||||||||||||| |||||||| | | |||||||| ||||||||||||    
T  33675565 cgcactagtttacacttgcgtcacttaacgtacacaacgctacttaacttgcgca 33675619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 142 - 179
Target Start/End: Complemental strand, 33710885 - 33710848
Alignment:
Q  142 tttacacttgcgctagttaactagcgcagggatatttt 179  Q
    |||||||||||| |||||||||||||||||| ||||||    
T  33710885 tttacacttgcgttagttaactagcgcaggggtatttt 33710848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 169
Target Start/End: Original strand, 19380195 - 19380271
Alignment:
Q  93 tacacttgcgccacttaacatgcgcaacgctatttaacttgcgcacaagtttacacttgcgctagttaactagcgca 169  Q
    |||| |||||| ||||||| |||||| || || ||||||  |||| |  |||||||||||| |||||||||||||||    
T  19380195 tacatttgcgcaacttaacttgcgcagcgttagttaactaacgcatacatttacacttgcgttagttaactagcgca 19380271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 1e-33; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 88 - 172
Target Start/End: Original strand, 34954867 - 34954951
Alignment:
Q  88 tagtttacacttgcgccacttaacatgcgcaacgctatttaacttgcgcacaagtttacacttgcgctagttaactagcgcaggg 172  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  34954867 tagtttacacttgcgccacttaacatgcgccgcgctatttaacttgcgcacaagtttacacttgcggtagttaactagcgcaggg 34954951  T

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Target: chr5; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 89 - 170
Target Start/End: Complemental strand, 18171238 - 18171157
Alignment:
Q  89 agtttacacttgcgccacttaacatgcgcaacgctatttaacttgcgcacaagtttacacttgcgctagttaactagcgcag 170  Q
    ||||||| |||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  18171238 agtttacccttgcgccacttaacatgtgcaacgctacctaacttgcgcacaagtttacacttgcgctagttaactagcgcag 18171157  T

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Target: chr5; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 91 - 183
Target Start/End: Complemental strand, 7661309 - 7661217
Alignment:
Q  91 tttacacttgcgccacttaacatgcgcaacgctatttaacttgcgcacaagtttacacttgcgctagttaactagcgcagggatattttggac 183  Q
    |||||| ||||||||||||||||||||||  ||| ||||||||||| |||||||||||||| ||||||||||||||||||||  |||||||||    
T  7661309 tttacatttgcgccacttaacatgcgcaatactagttaacttgcgcccaagtttacacttgtgctagttaactagcgcaggggcattttggac 7661217  T

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Target: chr5; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 101 - 181
Target Start/End: Complemental strand, 40031829 - 40031749
Alignment:
Q  101 cgccacttaacatgcgcaacgctatttaacttgcgcacaagtttacacttgcgctagttaactagcgcagggatattttgg 181  Q
    ||||||||||| ||||||||| || |||||||| |||| |||||||||||| |||||| |||||||||||||  |||||||    
T  40031829 cgccacttaacttgcgcaacgttacttaacttgtgcactagtttacacttgtgctagtaaactagcgcaggggcattttgg 40031749  T

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Target: chr5; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 91 - 154
Target Start/End: Complemental strand, 18171287 - 18171224
Alignment:
Q  91 tttacacttgcgccacttaacatgcgcaacgctatttaacttgcgcacaagtttacacttgcgc 154  Q
    ||||||||||||||||||||||||||||||||||  |||||| | ||||||||||| |||||||    
T  18171287 tttacacttgcgccacttaacatgcgcaacgctacctaacttacacacaagtttacccttgcgc 18171224  T

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Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 80 - 136
Target Start/End: Complemental strand, 1080997 - 1080941
Alignment:
Q  80 gttcgcattagtttacacttgcgccacttaacatgcgcaacgctatttaacttgcgc 136  Q
    ||||||| |||||||||||||||||||||||||||| |||||||  |||||||||||    
T  1080997 gttcgcactagtttacacttgcgccacttaacatgcacaacgctgcttaacttgcgc 1080941  T

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Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 154
Target Start/End: Complemental strand, 7661359 - 7661297
Alignment:
Q  91 tttacacttgcgccacttaacatgcgcaacgctatttaacttgcgcacaagtttacacttgcgc 154  Q
    |||||||||||||||||||| |||||||||||||  ||||||||| |||| |||||| ||||||    
T  7661359 tttacacttgcgccacttaa-atgcgcaacgctacctaacttgcgtacaaatttacatttgcgc 7661297  T

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Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 183
Target Start/End: Original strand, 2787663 - 2787720
Alignment:
Q  126 ttaacttgcgcacaagtttacacttgcgctagttaactagcgcagggatattttggac 183  Q
    ||||| ||| ||||||||||||||| || ||||||||||||||| ||| |||||||||    
T  2787663 ttaacatgcacacaagtttacacttacgttagttaactagcgcatggacattttggac 2787720  T

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Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 183
Target Start/End: Original strand, 25868567 - 25868608
Alignment:
Q  142 tttacacttgcgctagttaactagcgcagggatattttggac 183  Q
    |||||||||||||||||||||||||||||||  |||||||||    
T  25868567 tttacacttgcgctagttaactagcgcaggggcattttggac 25868608  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 180
Target Start/End: Original strand, 10533794 - 10533848
Alignment:
Q  126 ttaacttgcgcacaagtttacacttgcgctagttaactagcgcagggatattttg 180  Q
    |||||| |||||||  |||||||||||| |||||||||| |||||||||| ||||    
T  10533794 ttaactggcgcacatttttacacttgcgttagttaactaacgcagggataatttg 10533848  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 169
Target Start/End: Complemental strand, 20883039 - 20882961
Alignment:
Q  91 tttacacttgcgccacttaacatgcgcaacgctatttaacttgcgcacaagtttacacttgcgctagttaactagcgca 169  Q
    |||||||||||||  |||||| |||||||||||| ||||||  | || |  ||| |||||||| |||||||||||||||    
T  20883039 tttacacttgcgcatcttaacttgcgcaacgctagttaactaacacatagtttttcacttgcgttagttaactagcgca 20882961  T

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Target: scaffold0051 (Bit Score: 59; Significance: 3e-25; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 80 - 182
Target Start/End: Original strand, 21028 - 21130
Alignment:
Q  80 gttcgcattagtttacacttgcgccacttaacatgcgcaacgctatttaacttgcgcacaagtttacacttgcgctagttaactagcgcagggatatttt 179  Q
    ||||||| || ||||||||||  |||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||| |||| ||  |||||    
T  21028 gttcgcactaatttacacttgaaccacttaacatgcgcaacgctacttaacttgcgcacaagtttacaattgtgctagttaactaacgcatgggcatttt 21127  T
Q  180 gga 182  Q
    |||    
T  21128 gga 21130  T

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