View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_low_207 (Length: 203)
Name: NF13763_low_207
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_low_207 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 18544105 - 18543903
Alignment:
| Q |
1 |
gcggcatacattagcatatgtagagtgatatatccaaataaactgcaagaaatgtctacaatcttaaatagagcaagaaatgtctacaatcttatgtata |
100 |
Q |
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| T |
18544105 |
gcggcatacattagcatatgtagagtgatatatccaaatagactgcaagaaatgtctacaatcttaaatagagcaagaaatgtctacaatcttatgtata |
18544006 |
T |
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| Q |
101 |
agctgtttttataacagacaagaaaataaagccaaactcttttcataagttataagttgtttttctgatcagtataccaacagaaatgaaaacaaggtgc |
200 |
Q |
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| T |
18544005 |
agctgtttttataacagacgagaaaataaagccaaactcttttcataagttataagttgtttttctgatcagtataccaacagaaatgaaaacaaggtgc |
18543906 |
T |
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| Q |
201 |
caa |
203 |
Q |
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||| |
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| T |
18543905 |
caa |
18543903 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 149
Target Start/End: Original strand, 3757986 - 3758044
Alignment:
| Q |
91 |
cttatgtataagctgtttttataacagacaagaaaataaagccaaactcttttcataag |
149 |
Q |
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| T |
3757986 |
cttatgtataagctatttttgtaacaaaatataaaataaagtcaaactcttttcataag |
3758044 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 163
Target Start/End: Complemental strand, 28340525 - 28340454
Alignment:
| Q |
94 |
atgtataagctgtttttataacagacaagaaaataaagccaaactcttttca--taagttataagttgtttt |
163 |
Q |
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| T |
28340525 |
atgtataagctatttcttcaacaaacaataaaataaagtcaaactgttttcatgtaagttataagttgtttt |
28340454 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 163
Target Start/End: Complemental strand, 5998833 - 5998764
Alignment:
| Q |
92 |
ttatgtataagctgtttttataacagacaagaaaataaagccaaactcttttcataagttataagttgtttt |
163 |
Q |
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|||| |||||||| ||||||||||| | | ||||||||| ||||| ||||||||||||||||||||||| |
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| T |
5998833 |
ttatatataagctatttttataacaaaagataaaataaagttaaact--tttcataagttataagttgtttt |
5998764 |
T |
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