View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_low_208 (Length: 202)
Name: NF13763_low_208
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_low_208 |
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Alignment Details
Target: chr5 (Bit Score: 132; Significance: 9e-69; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 15685282 - 15685465
Alignment:
| Q |
1 |
tctctacttacctcccgaactagttgcnnnnnnncttagctgcagttgatccttcttctttgtcagcctttttcttatcaattttcttctttgaagtcct |
100 |
Q |
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| T |
15685282 |
tctctacttacctcccgaactagttgctttttttcttggctgcagttgatcct-cttctttgtcaacctttttcttatcaattttcttctttgaagtcct |
15685380 |
T |
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| Q |
101 |
tcttcaattgtgtatagtatataaaaagttaaatttactattatacaaggaaaacaagatcaacaagattattattactctaatg |
185 |
Q |
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| T |
15685381 |
tcttcaattttgcatagtatataaaaagttaaatatactattatacaaggaaaataagatcaacaagattattattactctaatg |
15685465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 39 - 173
Target Start/End: Original strand, 15620976 - 15621110
Alignment:
| Q |
39 |
gctgcagttgatccttcttctttgtcagcctttttcttatcaattttcttctttgaagtccttcttcaattgtgtatagtatataaaaagttaaatttac |
138 |
Q |
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| T |
15620976 |
gctgcagttgatccctcttctatgtcagcctctttcttaccagttttctgctttgaaagcttgcttcaattgtaaatagtttataaaaagttaaatatac |
15621075 |
T |
|
| Q |
139 |
tattatacaaggaaaacaagatcaacaagattatt |
173 |
Q |
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| T |
15621076 |
tttcatacaagataaacaagataaactagaatatt |
15621110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 95
Target Start/End: Complemental strand, 19016778 - 19016727
Alignment:
| Q |
44 |
agttgatccttcttctttgtcagcctttttcttatcaattttcttctttgaa |
95 |
Q |
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| T |
19016778 |
agttgatccttcttctacgtcagcctttttcttaccaatttgcttctttgaa |
19016727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 44 - 95
Target Start/End: Complemental strand, 18804995 - 18804944
Alignment:
| Q |
44 |
agttgatccttcttctttgtcagcctttttcttatcaattttcttctttgaa |
95 |
Q |
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||||||||||||| || ||||||||||||||||| | |||||||||||||| |
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| T |
18804995 |
agttgatccttctcctatgtcagcctttttcttaccggttttcttctttgaa |
18804944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 94
Target Start/End: Original strand, 17290705 - 17290755
Alignment:
| Q |
44 |
agttgatccttcttctttgtcagcctttttcttatcaattttcttctttga |
94 |
Q |
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| T |
17290705 |
agttgatccctttcctttgtcatcctttttcttattaattttcttctttga |
17290755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 94
Target Start/End: Original strand, 17307238 - 17307288
Alignment:
| Q |
44 |
agttgatccttcttctttgtcagcctttttcttatcaattttcttctttga |
94 |
Q |
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||||||||||| | |||||||| |||||||||||| |||||||||||||| |
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| T |
17307238 |
agttgatccttttcctttgtcatcctttttcttattgattttcttctttga |
17307288 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 82 - 185
Target Start/End: Complemental strand, 29215892 - 29215789
Alignment:
| Q |
82 |
ttttcttctttgaagtccttcttcaattgtgtatagtatataaaaagttaaatttactattatacaaggaaaacaagatcaacaagattattattactct |
181 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29215892 |
ttttcttctttgaagtccttcttcaattgtgtatagtatataaaaagttgaatatactattatacaaggaaaacaagatcaacaagattattattactct |
29215793 |
T |
|
| Q |
182 |
aatg |
185 |
Q |
| |
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|||| |
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| T |
29215792 |
aatg |
29215789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 76
Target Start/End: Complemental strand, 29215922 - 29215886
Alignment:
| Q |
39 |
gctgcagttgatccttcttctttgtcagcctttttctt |
76 |
Q |
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| T |
29215922 |
gctgcagttgatcct-cttctttgtcagcctttttctt |
29215886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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