View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_low_21 (Length: 613)
Name: NF13763_low_21
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 527; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 11 - 596
Target Start/End: Original strand, 25524565 - 25525150
Alignment:
| Q |
11 |
ccaagaatatatccatagagtactaaaagagctctataaagtgcatataccaaaagagcccagatactcccaaaattagtaaatccaaagagacctttca |
110 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
25524565 |
ccaaaaatatatccatagagtactaaaagagctctataaagtgcatataccaaaagagcccagatactcccaaaattagtaaatccaaagaggcctttca |
25524664 |
T |
|
| Q |
111 |
tacaaacagagtgcttgcttatacggagaattcataagctctactagctacaattcctttgtatcaaaatcaaatgtaataacaagcaaccgtattatat |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
25524665 |
tacaaacagagtgcttgcttatacggagaattcataagctctactagctacaattcctttgtatcaaaatcaaatgtaataagaagcaaccgtattatat |
25524764 |
T |
|
| Q |
211 |
acatgataaaaattgaaatccttagggcagcttctaatcccacccgtgtaaacatgaaatccttgctgatattatagaaaaggagccaacatcagaaaaa |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
25524765 |
acatgataaaaattgaaatccttagggcagcttctaatcccacccgtgtaaacatgaaatcgttgctgatattatagaaaaggagccaacatcagaaaaa |
25524864 |
T |
|
| Q |
311 |
acttaataaaccataaaatatgaaaattataggagcgaatggtaaattatgagtaatcagtcaacgcatcaccaaccaatttcactgaggaatgttacct |
410 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
25524865 |
acttaataaaccataaaatctgaaaattataggagcgaatggtaaattattagtaatcagtcaacgcatcatcaaccaatttcactgaggaatgttacct |
25524964 |
T |
|
| Q |
411 |
gttccatctatcatattnnnnnnnnncggctcctagagttgcatttgttgcgagcactcaaatcctcaaagccaaaggactactagcttcgttggagatt |
510 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
25524965 |
gttccatctatcatattaaaaaaaaacggctcctagagttgcatttgttgcgagcactcaaatcgtcaaagccaaaggactactagcttcgttggagatt |
25525064 |
T |
|
| Q |
511 |
taacttagtttcctttagctctttggcaacacactcagtcatatgaagaaaagggacaggacatcccttgaatatgtgttcatatc |
596 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25525065 |
taacttagtttcctttagctctttggcaacacactcagtcatatgaagaaaagggacaggacatcccttgaatatgtgttcatatc |
25525150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 293 - 596
Target Start/End: Complemental strand, 25517251 - 25516944
Alignment:
| Q |
293 |
gagccaacatcagaaaaaacttaataaaccataaaatatgaaaattataggagcgaatggtaaattatgagtaatcagtcaacgcatcaccaaccaattt |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||| |||| |||| || ||||||| |
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| T |
25517251 |
gagccaacatcagaaaaaacttaataaaccataaaatttgaaaattgtaggagcgaatggtaaaatatgagtaatcagctaacgtatcagcagccaattt |
25517152 |
T |
|
| Q |
393 |
cactgaggaatgttacctgttccatctatcatatt-----nnnnnnnnncggctcctagagttgcatttgttgcgagcactcaaatcctcaaagccaaag |
487 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
25517151 |
cactgaggaacgttacctattccatctatcatatttaccattaaaaaaacagctcctagagttgcatttgttgcgagcactcgaatcctcaaagccaaag |
25517052 |
T |
|
| Q |
488 |
gactactagcttcgttggagatttaacttagtttcctttagctctttggcaacacactcagtcatatgaagaaaagggacaggacatcccttgaatatgt |
587 |
Q |
| |
|
|||| |||| ||| ||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||| ||| | |
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| T |
25517051 |
gacttctagtttc-atgggtccttaacttagtttcctttagctctttggcaacacactcagccataagaagaaaagggacagaacatccctttgatactt |
25516953 |
T |
|
| Q |
588 |
gttcatatc |
596 |
Q |
| |
|
||||||||| |
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|
| T |
25516952 |
gttcatatc |
25516944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 258 - 495
Target Start/End: Original strand, 25540347 - 25540590
Alignment:
| Q |
258 |
gtaaacatgaaatccttgctgatattatagaaaaggagccaacatcagaaaaaacttaataaaccataaaatatgaaaattataggagcgaatggtaaat |
357 |
Q |
| |
|
|||| ||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||| | |||||| |||||||| ||||||| ||||||||| |
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|
| T |
25540347 |
gtaagcataaaatccttactgatattatagaaaaggagccaacatcataaaaaacttaataaatcttaaaatctgaaaattgtaggagcaaatggtaaaa |
25540446 |
T |
|
| Q |
358 |
tatgagtaatcagtcaacgcatcaccaaccaatttcactgaggaatgttacctgttccatctatcatat------tnnnnnnnnncggctcctagagttg |
451 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||||||||||| ||||| |||||||||||||| || | | ||||||||||||| |
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| T |
25540447 |
tatgagtaatcagctaacgcatcagtaaccaatttcactgaggaacgttacttgttccatctatcaaatttaccattatatagaacagctcctagagttg |
25540546 |
T |
|
| Q |
452 |
catttgttgcgagcactcaaatcctcaaagccaaaggactacta |
495 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
25540547 |
catttgttgcgagcactcgaatcctcaaagctaaaggactacta |
25540590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 44 - 219
Target Start/End: Original strand, 25540172 - 25540343
Alignment:
| Q |
44 |
ctataaagtgcatataccaaaagagcccagatactcccaaaattagtaaatccaaagagacctttcatacaaacagagtgcttgcttatacggagaattc |
143 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| ||||||| |||| |||||||| || || |||||||||| ||||||||| |||| ||| ||| |
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|
| T |
25540172 |
ctataaagtgcatataccaaaagagcccacatacgcccaaaactagtcaatccaaataggcccttcatacaaaaagagtgctt----ataccaagagttc |
25540267 |
T |
|
| Q |
144 |
ataagctctactagctacaattcctttgtatcaaaatcaaatgtaataacaagcaaccgtattatatacatgataa |
219 |
Q |
| |
|
||||||| ||||||||||| ||| || |||||||||||||||||||||||| |||||||||||||||||| |||| |
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|
| T |
25540268 |
ataagctgcactagctacaaatccgttatatcaaaatcaaatgtaataacaaacaaccgtattatatacattataa |
25540343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 74 - 217
Target Start/End: Complemental strand, 25517391 - 25517252
Alignment:
| Q |
74 |
atactcccaaaattagtaaatccaaagagacctttcatacaaacagagtgcttgcttatacggagaattcataagctctactagctacaattcctttgta |
173 |
Q |
| |
|
|||| ||||||| |||| |||||||| || || |||||||||| ||||||||| |||| ||| |||||||||| ||||||||||| |||||| || |
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|
| T |
25517391 |
atacgcccaaaactagtcaatccaaataggcccttcatacaaaaagagtgctt----ataccaagagttcataagctgcactagctacaaatcctttata |
25517296 |
T |
|
| Q |
174 |
tcaaaatcaaatgtaataacaagcaaccgtattatatacatgat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25517295 |
tcaaaatcaaatgtaataacaagcaaccgtattatatacatgat |
25517252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 509 - 595
Target Start/End: Original strand, 25537587 - 25537673
Alignment:
| Q |
509 |
tttaacttagtttcctttagctctttggcaacacactcagtcatatgaagaaaagggacaggacatcccttgaatatgtgttcatat |
595 |
Q |
| |
|
||||||||| |||| |||| ||||||||||||||||||| |||||||||| |||||||||| |||||||||||||| ||||||||| |
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|
| T |
25537587 |
tttaacttaatttcatttatctctttggcaacacactcattcatatgaaggaaagggacagaacatcccttgaatacttgttcatat |
25537673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 443 - 569
Target Start/End: Original strand, 44461030 - 44461149
Alignment:
| Q |
443 |
ctagagttgcatttgttgcgagcactcaaatcctcaaagccaaaggactactagcttcgttggagatttaacttagtttcctttagctctttggcaacac |
542 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||| |||||| |||||| | | |||||||||| |||||| ||||| || ||||||| |
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|
| T |
44461030 |
ctagagttgcatttgttgcaagcactccaatcctcaaag------gactaccagcttcaagtg-gctttaacttagcttccttaagctcctttgcaacac |
44461122 |
T |
|
| Q |
543 |
actcagtcatatgaagaaaagggacag |
569 |
Q |
| |
|
|||||| ||||||||||||||| |||| |
|
|
| T |
44461123 |
actcagccatatgaagaaaaggaacag |
44461149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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