View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13763_low_23 (Length: 608)

Name: NF13763_low_23
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13763_low_23
NF13763_low_23
[»] chr3 (16 HSPs)
chr3 (1-596)||(23018475-23019070)
chr3 (1-342)||(23141489-23141833)
chr3 (1-317)||(23025492-23025805)
chr3 (1-307)||(23040266-23040566)
chr3 (1-305)||(23150099-23150403)
chr3 (1-189)||(23037389-23037577)
chr3 (1-188)||(23147141-23147328)
chr3 (1-108)||(23034072-23034179)
chr3 (9-105)||(22939479-22939575)
chr3 (67-179)||(22947740-22947852)
chr3 (225-307)||(23147359-23147441)
chr3 (73-129)||(22987478-22987534)
chr3 (55-105)||(22914072-22914122)
chr3 (65-179)||(22973576-22973690)
chr3 (225-307)||(23037607-23037689)
chr3 (55-105)||(22933969-22934019)
[»] scaffold0554 (1 HSPs)
scaffold0554 (45-307)||(4991-5253)
[»] chr6 (2 HSPs)
chr6 (1-189)||(21781156-21781344)
chr6 (73-129)||(14307656-14307712)
[»] chr8 (1 HSPs)
chr8 (73-129)||(23611543-23611599)
[»] scaffold0059 (1 HSPs)
scaffold0059 (70-127)||(63442-63499)
[»] chr1 (2 HSPs)
chr1 (70-127)||(12611309-12611366)
chr1 (70-179)||(15884630-15884739)


Alignment Details
Target: chr3 (Bit Score: 496; Significance: 0; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 1 - 596
Target Start/End: Original strand, 23018475 - 23019070
Alignment:
Q  1 aagtgaatatcatgggttttcataacctcctttgcaaactcagctgatgaaatgacaatagtagaaacttctccaagttgaagatgcatcaagggtccat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23018475 aagtgaatatcatgggttttcataacctcctttgcaaactcagctgatgaaatgacaatagtagaaacttctccaagttgaagatgcatcaagggtccat 23018574  T
Q  101 attttttggccaagtcacttaattttctatggggttgagagcttagaagattgtgtatatttcctataataggtagctttctaggcccttttgggaggtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23018575 attttttggccaagtcacttaattttctatggggttgagagcttagaagattgtgtatatttcctataataggtagctttctaggcccttttgggaggtt 23018674  T
Q  201 aaaagttgagtctgnnnnnnngagcttctttcctactttttgtacaacaatggctaagaggacaaaggagaaaagatatgacaagtagaggactagtaga 300  Q
    ||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  23018675 aaaagttgagtctgtttttttgagcttctttcctactttttgtacaacaatggctaagaggacaaaggagaaaagatatgacaagtagagggctagtaga 23018774  T
Q  301 gccatggtaaagaaagatagtattatgtattatgtgctaccattttgtggtttatatacatatgatatgatatacaatcgagacattattgatatagtta 400  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23018775 gccatggaaaagaaagatagtattatgtattatgtgctactattttgtggtttatatacatatgatatgatatacaatcgagacattattgatatagtta 23018874  T
Q  401 aaaatatagagttgaatctgagatacttatacaaatccaatggttccctcgtggtcaataaaaaatgctgttatgtccttttccatggaaagtaaacgag 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23018875 aaaatatagagttgaatctgagatacttatacaaatccaatggttccctcgtggtcaataaaaaatgctgttatgtccttttccatggaaagtaaacgag 23018974  T
Q  501 agggacattttggaagcataatacgtgtnnnnnnnnnnnnnnnnnnnnngttatttaattagaacgtatacactgaagttactaattcagaataat 596  Q
    ||| ||||||||||||||||||||||||                     |||||||||||||||||||||||||||||||||||||||||||||||    
T  23018975 aggaacattttggaagcataatacgtgtcaaaaattacaaaacaaaaaagttatttaattagaacgtatacactgaagttactaattcagaataat 23019070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 23141489 - 23141833
Alignment:
Q  1 aagtgaatatcatgggttttcataacctcctttgcaaactcagctgatgaaatgacaatagtagaaacttctccaagttgaagatgcatcaagggtccat 100  Q
    |||| ||||||||| |||||||| |||||| | ||| | |||| ||||||||| |||||  | ||||  |||||||||||||||||||||||||||||||    
T  23141489 aagttaatatcatgagttttcatcacctccctagcacaatcaggtgatgaaattacaatcatggaaatctctccaagttgaagatgcatcaagggtccat 23141588  T
Q  101 attttttggccaagtcacttaattttctatggggttgagagcttagaagattgtgtatatttcctataataggtagctttctaggcccttttgggaggtt 200  Q
    ||||| | ||||| || |||| |||| |||| |||||||| ||||  |||||||||| |||||||||||||||||||||| |||||||||| ||||||||    
T  23141589 attttctagccaaatctcttagttttttatgtggttgagaacttaacagattgtgtaaatttcctataataggtagctttataggccctttagggaggtt 23141688  T
Q  201 aaaagttgagtctgnnnnnnngagcttctttcctactttttgtacaacaatggctaagaggacaaaggagaaaagatatgacaagtagaggactagtaga 300  Q
    ||||||||||||||       || ||||||| |||||||||||| || || ||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  23141689 aaaagttgagtctgtgttcttgaacttcttttctactttttgtagaataagggctaagaggacaaaggagaaaatatatgacaagtagatgactagtaga 23141788  T
Q  301 gccatggtaaagaaaga---tagtattatgtattatgtgctacca 342  Q
    ||||||| |||||||||   | ||||||||| | |||||||||||    
T  23141789 gccatggaaaagaaagaaagttgtattatgtgtcatgtgctacca 23141833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 23025492 - 23025805
Alignment:
Q  1 aagtgaatatcatgggttttcataacctcctttgcaaactcagctgatgaaatgacaatagtagaaacttctccaagttgaagatgcatcaagggtccat 100  Q
    |||| ||||||||| |||||||| |||||| | ||| | || | ||||||||||||||||   ||||  ||||||||||| |||||||||||||||||||    
T  23025492 aagttaatatcatgagttttcatcacctccctagcacagtctggtgatgaaatgacaataaaggaaatctctccaagttggagatgcatcaagggtccat 23025591  T
Q  101 attttttggccaagtcacttaattttctatggggttgagagcttagaagattgtgtatatttcctataataggtagctttctaggcccttttgggaggtt 200  Q
    ||| | | |||||||| | || ||||| ||| |||||||||||||  ||||||||||||||||||||||| |||||||||||||| || || ||||||||    
T  23025592 attctcttgccaagtctcgtagttttcgatgtggttgagagcttaacagattgtgtatatttcctataattggtagctttctaggtccattagggaggtt 23025691  T
Q  201 aaaagttgagtctgnnnnnnngagcttctttcctactttttgtacaacaatggctaagaggacaaaggagaaaagatatgacaagtagaggactagtaga 300  Q
    ||||   | |||||       ||||||||||||||||||||||||||||||||||||||| | |||| |||||| ||||||||||||||||||||||| |    
T  23025692 aaaa---gggtctgtgttcttgagcttctttcctactttttgtacaacaatggctaagagaataaagaagaaaatatatgacaagtagaggactagtaaa 23025788  T
Q  301 gccatggtaaagaaaga 317  Q
    ||||||| |||||||||    
T  23025789 gccatggaaaagaaaga 23025805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 23040266 - 23040566
Alignment:
Q  1 aagtgaatatcatgggttttcataacctcctttgcaaactcagctgatgaaatgacaatagtagaaacttctccaagttgaagatgcatcaagggtccat 100  Q
    ||||||||||||||||||||||| |||||    ||| |||| |  ||||||||||| |||| |||||| |||||||||||||||||||||| ||||||||    
T  23040266 aagtgaatatcatgggttttcattacctcgccagcacactcgggcgatgaaatgaccatagcagaaacctctccaagttgaagatgcatcaggggtccat 23040365  T
Q  101 attttttggccaagtcacttaattttctatggggttgagagcttagaagattgtgtatatttcctataataggtagctttctaggcccttttgggaggtt 200  Q
    |||||||||||||||| |||| ||||| ||||||||||||| |||  |||||||||||||||||||||||||||| |||| ||||||||  ||| | |||    
T  23040366 attttttggccaagtctcttagttttcgatggggttgagaggttaacagattgtgtatatttcctataataggtaactttataggccctggtggtatgtt 23040465  T
Q  201 aaaagttgagtctgnnnnnnngagcttctttcctactttttgtacaacaatggctaagaggacaaaggagaaaagatatgacaagtagaggactagtaga 300  Q
    | |||| ||||             ||| |||||||  |||||||| |||| || |||||||| ||||||||||| ||||| ||||||||||| |||||||    
T  23040466 ataagtcgagt------aacttttcttgtttcctatcttttgtactacaagggttaagaggataaaggagaaaatatatggcaagtagaggattagtaga 23040559  T
Q  301 gccatgg 307  Q
    |||||||    
T  23040560 gccatgg 23040566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 23150099 - 23150403
Alignment:
Q  1 aagtgaatatcatgggttttcataacctcctttgcaaactcagctgatgaaatgacaatagtagaaacttctccaagttgaagatgcatcaagggtccat 100  Q
    |||| ||| ||||| |||||||| |||||| | ||| | |||| ||||||||| ||||   | ||||  | |||||||||||||||||||||||||||||    
T  23150099 aagttaatgtcatgagttttcatcacctccctagcacagtcagatgatgaaattacaaccatggaaatctgtccaagttgaagatgcatcaagggtccat 23150198  T
Q  101 attttttggccaagtcacttaattttctatggggttgagagcttagaagattgtgtatatttcctataataggtagctttctaggcccttttgggaggtt 200  Q
    ||||| | ||||| || |||| ||||  ||| |||||||| ||||  |||||||||| |||||| ||||| ||||||||| |||||||||| ||||||||    
T  23150199 attttctagccaaatctcttagtttttgatgtggttgagaacttaacagattgtgtaaatttccaataattggtagctttataggccctttagggaggtt 23150298  T
Q  201 aaaagttgagtctgnnnnnnngagcttctttcctactttttgtacaacaatggctaagaggacaaaggagaaaagatatgacaagtagaggactagtaga 300  Q
    | ||||||| ||||       ||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||| |||| ||||| ||||  ||||    
T  23150299 ataagttgaatctgttttcttgagcttctttcctactttttgtaaaacaagggctaagagaacaaaggagaaaagataagacaggtagatgacttctaga 23150398  T
Q  301 gccat 305  Q
    |||||    
T  23150399 gccat 23150403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 23037389 - 23037577
Alignment:
Q  1 aagtgaatatcatgggttttcataacctcctttgcaaactcagctgatgaaatgacaatagtagaaacttctccaagttgaagatgcatcaagggtccat 100  Q
    |||||||||||||| |||||||| |||||  | ||| |||| | ||| |||||||| ||| ||||||| ||||||||||||||||||||||  |||||||    
T  23037389 aagtgaatatcatgagttttcatcacctcgctggcacactcgggtgacgaaatgaccatattagaaacctctccaagttgaagatgcatcactggtccat 23037488  T
Q  101 attttttggccaagtcacttaattttctatggggttgagagcttagaagattgtgtatatttcctataataggtagctttctaggccct 189  Q
    |||||||||||||||| |||||||| |||||||||||||||||||  |||||||||||||||||||||||||||| |||| ||||||||    
T  23037489 attttttggccaagtctcttaatttcctatggggttgagagcttaacagattgtgtatatttcctataataggtaactttataggccct 23037577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 23147141 - 23147328
Alignment:
Q  1 aagtgaatatcatgggttttcataacctcctttgcaaactcagctgatgaaatgacaatagtagaaacttctccaagttgaagatgcatcaagggtccat 100  Q
    ||||||||||||||||||||||| |||||  | ||| |||| |  ||||||||||| |||| |||||| ||||||||||||||||||||||  |||||||    
T  23147141 aagtgaatatcatgggttttcatcacctcactagcacactcgggggatgaaatgaccatagcagaaacctctccaagttgaagatgcatcactggtccat 23147240  T
Q  101 attttttggccaagtcacttaattttctatggggttgagagcttagaagattgtgtatatttcctataataggtagctttctaggccc 188  Q
    ||||||| |||||||| |||||||||  |||||||||||||||||  ||||||||||||||||||||||| |||| ||||||||||||    
T  23147241 attttttcgccaagtctcttaatttttgatggggttgagagcttaacagattgtgtatatttcctataattggtaactttctaggccc 23147328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 23034072 - 23034179
Alignment:
Q  1 aagtgaatatcatgggttttcataacctcctttgcaaactcagctgatgaaatgacaatagtagaaacttctccaagttgaagatgcatcaagggtccat 100  Q
    ||||||||||||||||||||||| |||||| | ||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  23034072 aagtgaatatcatgggttttcatcacctccctagcaaactcagtggatgaaatgacaatagtagaaacctctccaagttgaagatgcatcaaggatccat 23034171  T
Q  101 attttttg 108  Q
    ||| ||||    
T  23034172 attgtttg 23034179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 105
Target Start/End: Complemental strand, 22939575 - 22939479
Alignment:
Q  9 atcatgggttttcataacctcctttgcaaactcagctgatgaaatgacaatagtagaaacttctccaagttgaagatgcatcaagggtccatatttt 105  Q
    ||||||| ||||||| || || |||||| | |||||||||||||  ||||||||||||||||||||||| |  |||||||| || ||||||||||||    
T  22939575 atcatggtttttcatcacttcttttgcatattcagctgatgaaaccacaatagtagaaacttctccaagctttagatgcattaatggtccatatttt 22939479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 67 - 179
Target Start/End: Original strand, 22947740 - 22947852
Alignment:
Q  67 acttctccaagttgaagatgcatcaagggtccatattttttggccaagtcacttaattttctatggggttgagagcttagaagattgtgtatatttccta 166  Q
    ||||| ||||||||||||||||| || || |||||||| || | ||| || |||||||||||||| ||| ||||||  | |||||| ||||| |||||||    
T  22947740 acttcaccaagttgaagatgcattaaagggccatatttatttgacaattctcttaattttctatgtggtggagagccaataagattatgtatgtttccta 22947839  T
Q  167 taataggtagctt 179  Q
    | || ||||||||    
T  22947840 tgattggtagctt 22947852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 225 - 307
Target Start/End: Original strand, 23147359 - 23147441
Alignment:
Q  225 cttctttcctactttttgtacaacaatggctaagaggacaaaggagaaaagatatgacaagtagaggactagtagagccatgg 307  Q
    |||||||| ||  |||||||| | || || |||||||| |||| |||||| ||||| ||||||||||||||||||||||||||    
T  23147359 cttctttcttatcttttgtactataagggttaagaggataaagaagaaaatatatggcaagtagaggactagtagagccatgg 23147441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 73 - 129
Target Start/End: Original strand, 22987478 - 22987534
Alignment:
Q  73 ccaagttgaagatgcatcaagggtccatattttttggccaagtcacttaattttcta 129  Q
    |||||||| |||||||||||||||||||||||||| || || || ||||||||||||    
T  22987478 ccaagttgtagatgcatcaagggtccatatttttttgctaaatctcttaattttcta 22987534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 22914122 - 22914072
Alignment:
Q  55 acaatagtagaaacttctccaagttgaagatgcatcaagggtccatatttt 105  Q
    ||||||||||||||||||||||| |  |||||||| |||||||||||||||    
T  22914122 acaatagtagaaacttctccaagctttagatgcattaagggtccatatttt 22914072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 179
Target Start/End: Original strand, 22973576 - 22973690
Alignment:
Q  65 aaacttctccaagttgaagatgcatcaagggtccatattttttggccaagtcacttaattttctatggggttgagagcttagaagattgtgtatatttcc 164  Q
    ||||||| ||||||||||||||||| || |  ||||||||| | | ||| || |||||||||||||| ||| ||||||  | |||||| ||||| |||||    
T  22973576 aaacttcaccaagttgaagatgcattaaagcaccatattttgttgacaattctcttaattttctatgtggtggagagccaataagattatgtatgtttcc 22973675  T
Q  165 tataataggtagctt 179  Q
     || || ||||||||    
T  22973676 aatgattggtagctt 22973690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 225 - 307
Target Start/End: Original strand, 23037607 - 23037689
Alignment:
Q  225 cttctttcctactttttgtacaacaatggctaagaggacaaaggagaaaagatatgacaagtagaggactagtagagccatgg 307  Q
    |||||||| ||  |||||||| | || || |||||||| ||||||||||| ||||| ||||||||| |||| |||||||||||    
T  23037607 cttctttcttatcttttgtactataagggttaagaggaaaaaggagaaaaaatatggcaagtagagaactattagagccatgg 23037689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 22933969 - 22934019
Alignment:
Q  55 acaatagtagaaacttctccaagttgaagatgcatcaagggtccatatttt 105  Q
    ||||||||||||||||||||||| |  |||||||| || ||||||||||||    
T  22933969 acaatagtagaaacttctccaagctttagatgcattaaaggtccatatttt 22934019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0554 (Bit Score: 170; Significance: 6e-91; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 45 - 307
Target Start/End: Complemental strand, 5253 - 4991
Alignment:
Q  45 tgatgaaatgacaatagtagaaacttctccaagttgaagatgcatcaagggtccatattttttggccaagtcacttaattttctatggggttgagagctt 144  Q
    ||||||||| |||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  5253 tgatgaaataacaatagttgaaatttctccaagttgaagatgcatcacgggtccatattttttggccaagtcacttaatttcctatggggttgagagctt 5154  T
Q  145 agaagattgtgtatatttcctataataggtagctttctaggcccttttgggaggttaaaagttgagtctgnnnnnnngagcttctttcctactttttgta 244  Q
    || | |||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||       |||||||||||||||||||||||    
T  5153 agcaaattgtgaatatttcctataataggtagctttctaggcccttttggaaggttaaatgttgagtctgttttcttgagcttctttcctactttttgta 5054  T
Q  245 caacaatggctaagaggacaaaggagaaaagatatgacaagtagaggactagtagagccatgg 307  Q
    ||| || ||||||||| |||||||||||||   |||||| |||||||||| ||||||||||||    
T  5053 caagaagggctaagagaacaaaggagaaaaataatgacacgtagaggacttgtagagccatgg 4991  T

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Target: chr6 (Bit Score: 113; Significance: 6e-57; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 21781156 - 21781344
Alignment:
Q  1 aagtgaatatcatgggttttcataacctcctttgcaaactcagctgatgaaatgacaatagtagaaacttctccaagttgaagatgcatcaagggtccat 100  Q
    |||| |||||||| ||||||||| |||||||| ||| |||| |  |||| |||||||||||||||||| ||||||||||||||||||||||  |||||||    
T  21781156 aagttaatatcattggttttcatcacctccttagcacactccggagatgtaatgacaatagtagaaacctctccaagttgaagatgcatcactggtccat 21781255  T
Q  101 attttttggccaagtcacttaattttctatggggttgagagcttagaagattgtgtatatttcctataataggtagctttctaggccct 189  Q
    |||||||||||||||| |||||| ||| || ||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||    
T  21781256 attttttggccaagtctcttaatcttcgattgggttgagagcttaacagattgtgtatatttcctataataggtaactttctaggccct 21781344  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 73 - 129
Target Start/End: Original strand, 14307656 - 14307712
Alignment:
Q  73 ccaagttgaagatgcatcaagggtccatattttttggccaagtcacttaattttcta 129  Q
    |||||||||||||||||||||||||||||||||||||| || || |||||| |||||    
T  14307656 ccaagttgaagatgcatcaagggtccatattttttggctaaatctcttaatcttcta 14307712  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 73 - 129
Target Start/End: Original strand, 23611543 - 23611599
Alignment:
Q  73 ccaagttgaagatgcatcaagggtccatattttttggccaagtcacttaattttcta 129  Q
    |||||||||||||||||||||||||||||||||||||| || || |||||| |||||    
T  23611543 ccaagttgaagatgcatcaagggtccatattttttggctaaatctcttaatcttcta 23611599  T

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Target: scaffold0059 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 70 - 127
Target Start/End: Original strand, 63442 - 63499
Alignment:
Q  70 tctccaagttgaagatgcatcaagggtccatattttttggccaagtcacttaattttc 127  Q
    ||||||||||| || |||||||||| ||||| | |||||||||||||||| |||||||    
T  63442 tctccaagttgtagctgcatcaaggatccatgtgttttggccaagtcactcaattttc 63499  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 70 - 127
Target Start/End: Original strand, 12611309 - 12611366
Alignment:
Q  70 tctccaagttgaagatgcatcaagggtccatattttttggccaagtcacttaattttc 127  Q
    ||||||||||| || |||||||||||||||||  |||| |||||||| ||||||||||    
T  12611309 tctccaagttgtaggtgcatcaagggtccataaattttcgccaagtctcttaattttc 12611366  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 179
Target Start/End: Complemental strand, 15884739 - 15884630
Alignment:
Q  70 tctccaagttgaagatgcatcaagggtccatattttttggccaagtcacttaattttctatggggttgagagcttagaagattgtgtatatttcctataa 169  Q
    ||||| ||||| || ||||| |||||||||| | ||||||||||||| |||||||||  ||| |||  |||| | |  ||||  ||||| | ||||||||    
T  15884739 tctcctagttgtagttgcattaagggtccatgtattttggccaagtctcttaatttttgatgtggtgtagaggtaactagatgatgtatgtgtcctataa 15884640  T
Q  170 taggtagctt 179  Q
    ||||||||||    
T  15884639 taggtagctt 15884630  T

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