View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13763_low_27 (Length: 590)
Name: NF13763_low_27
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_low_27 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 420; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 87 - 575
Target Start/End: Original strand, 44624937 - 44625429
Alignment:
| Q |
87 |
aatcaaatgtacccatataactagtttgtttttataaaaccgcggtaatttaagagttagccaactttccaaacacacacttagtattagtggttaggtg |
186 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
44624937 |
aatcaaacgcacccatataactagtttgtttttataaaaccgcggtaatttaagagttagccaactttccaaacacacacttggtattagtggttaggtg |
44625036 |
T |
|
| Q |
187 |
gtatggaatatgttaaggatgatgtcaatttagtaaatgctgtcatagccaaccatgtttgattctaggttgttccagtaatcttttctggggtgaattt |
286 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44625037 |
gtatgacatatgttaaggatcatgtcaatttagtaaatggtgtcatagccaaccatgtttgattctaggttgttccagtaatcttttctggggtgaattt |
44625136 |
T |
|
| Q |
287 |
tatgatagtttttatttgcaaatttattttcgtgctcaattaactgtggccttatg----nnnnnnnncaattgagtactagtatggctgttttccagtg |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
44625137 |
tatgatagtttttatttgcaaatttattttcgtgctcaattaactgtggccttatgttttttttttttcaattgagtactagtatggctgttttccagtg |
44625236 |
T |
|
| Q |
383 |
ataataattattatgagactacagttgtctgttggtaacataaaatgttagttatgttttattgtagagttcaattgctttaccattgtccctctatgct |
482 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44625237 |
ataataattattatgagactacagttgtctgttggtaacataaaatgttagttatgttttattgtagagttcaattgctttaccattgtccctctatgca |
44625336 |
T |
|
| Q |
483 |
agtattttaattacttcaaattctgcagtaaagaatattgataatagttacgatcaactgttttaccattgaaatgtgtccaagaattatact |
575 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44625337 |
agtattttaattacttcaaattctgcagtaaagaatattgataatagttacgatcaactgttttaccattgaaatgtgtccaagaattatact |
44625429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 415 - 522
Target Start/End: Original strand, 44652388 - 44652495
Alignment:
| Q |
415 |
tggtaacataaaatgttagttatgttttattgtagagttcaattgctttaccattgtccctctatgctagtattttaattacttcaaattctgcagtaaa |
514 |
Q |
| |
|
|||||||| || ||||||| ||||||||||||| |||| |||||| ||||| ||||||||||| |||||| |||| |||| ||||||||||| | || |
|
|
| T |
44652388 |
tggtaacacaatatgttaggtatgttttattgtcgagtccaattgttttacgattgtccctcttagctagtgttttctttacatcaaattctgccatgaa |
44652487 |
T |
|
| Q |
515 |
gaatattg |
522 |
Q |
| |
|
|||||||| |
|
|
| T |
44652488 |
gaatattg |
44652495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 410 - 522
Target Start/End: Original strand, 44681299 - 44681411
Alignment:
| Q |
410 |
tctgttggtaacataaaatgttagttatgttttattgtagagttcaattgctttaccattgtccctctatgctagtattttaattacttcaaattctgca |
509 |
Q |
| |
|
|||| |||||||| || ||||||| ||||||| ||||| |||| |||||| ||||| ||||||||||| |||||| |||| |||| ||||||||||| |
|
|
| T |
44681299 |
tctgctggtaacacaatatgttaggtatgtttgattgtcgagtccaattgttttacgattgtccctcttagctagtgttttctttacatcaaattctgcc |
44681398 |
T |
|
| Q |
510 |
gtaaagaatattg |
522 |
Q |
| |
|
| |||||||||| |
|
|
| T |
44681399 |
atgaagaatattg |
44681411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 132 - 186
Target Start/End: Original strand, 44630831 - 44630885
Alignment:
| Q |
132 |
taatttaagagttagccaactttccaaacacacacttagtattagtggttaggtg |
186 |
Q |
| |
|
||||||||||||| ||| |||||| ||||| ||||||||||||| | |||||||| |
|
|
| T |
44630831 |
taatttaagagttggccgactttctaaacatacacttagtattacttgttaggtg |
44630885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University