View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_low_28 (Length: 589)
Name: NF13763_low_28
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 18 - 436
Target Start/End: Original strand, 3019011 - 3019441
Alignment:
| Q |
18 |
tggcatagagtacttgagcaaatttatccaccatttctctttggtgcttgtctttgcaaagcttaacctccatgtgtgatactcaatgaatgataataat |
117 |
Q |
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| T |
3019011 |
tggcatagagtacttgagcaaagttatccaccatttctctttggtgcttgtctttgcaaatcttaacctccatgtgtgatactcaatgaatgataataat |
3019110 |
T |
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| Q |
118 |
a------------ttacagttacattacatatagtagtactatgagtgaggattggagaagagtacgggacacgcacatgaaagaatccttatcatcatg |
205 |
Q |
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| T |
3019111 |
aataataatattattacagttacattacatatagtagtactatgagtgaggattggagaagagtacgggacacgcacatgaaaggatccttatcatcatg |
3019210 |
T |
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| Q |
206 |
tatgatgaacaaagatcactcacatgattcattgagacaaagaaaatggatctaacataacatgattaaataaatataaaggcattgaaggacatgaaga |
305 |
Q |
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| T |
3019211 |
tatgatgaacaaagatcactcacatgattcattgagacaaagaaaatggatctaacataacatgattaaataaatataaaggcattgaaggacatgaaga |
3019310 |
T |
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| Q |
306 |
gtggttagttacattacataatgtccaagaagaagaaaacgtgtgtagattcaaactttttgtcacataaagcagcatgtagtgaacataacatggattt |
405 |
Q |
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| T |
3019311 |
gtggttagttacattacataatgaccaagaagaagaaaacgtgtgtagattcaaactttttgtcacataaagcagcatgtagtgaacataacatggattt |
3019410 |
T |
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| Q |
406 |
cccattctagggtttctctaaaatctaatta |
436 |
Q |
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| T |
3019411 |
cccattctagggtttctctaaaatctaatta |
3019441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 529 - 574
Target Start/End: Original strand, 3019536 - 3019581
Alignment:
| Q |
529 |
agtagtagttagatatgttagatggaatggaatgaaatgaaagaag |
574 |
Q |
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| T |
3019536 |
agtagtagttagatatgttagatggaatggaatgaaatgaaagaag |
3019581 |
T |
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