View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_low_29 (Length: 588)
Name: NF13763_low_29
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_low_29 |
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| [»] chr7 (6 HSPs) |
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| [»] scaffold0361 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 429; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 20 - 588
Target Start/End: Complemental strand, 3594996 - 3594418
Alignment:
| Q |
20 |
catggtggccgtggttgtcattcttccaccctccaacctctctccaatcgcaaccagaggttctctaatcgcattcgtgcttctcccttggaggttggtg |
119 |
Q |
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| T |
3594996 |
catggtggccgtggttctcattcttccaccctccaacctctctccaatcgcaaccagaggttctctaaccgcattcgtgcttctccattggaggttggtg |
3594897 |
T |
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| Q |
120 |
agggtattcaatttgagctgttttcnnnnnnnnnnnnnnatggtcttgaaatgtgacttggaatttgttgtttgttgttacaggagtgggaaggaagaac |
219 |
Q |
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| T |
3594896 |
agggtattcagtttgagctgttttcgtgtgtgtgtgt--atggtcttgaaatgtgacttggaatttattgtttgttgttacaggagtgggaaggaagaac |
3594799 |
T |
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| Q |
220 |
aaatattgccatgtctaacactgttacaacagaaattcgtggaagtctgatgcatatgtctatcggtaaaactaaaactactgggaaagtcgaccgagcc |
319 |
Q |
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| T |
3594798 |
aaatattggcatgtctaacactgttaccacagaaattcgtggaagtctgatgcatatgtctatcggtaaaactaaaactactgggaaagtcgaccgagcc |
3594699 |
T |
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| Q |
320 |
actgttgagaacgtatttaaccaataattttgttcttacaattcattttcaataattttaatacaactaacacaaaaattccctcaggcaattgatctca |
419 |
Q |
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| T |
3594698 |
actgttgagaacgtacgtaaccaatcattttcttcttacaattcattttcaataatttgtatacaactaacacaaaaattccctcaggcaattgatctca |
3594599 |
T |
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| Q |
420 |
gaacgcgcatggctttatttaagatgatgaacaataatctgtttcagcatattaatggatgcatttcaactggaaaagaagtatgct------------a |
507 |
Q |
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| T |
3594598 |
gaacgcgcatggctatatttaagatgatcaacaataatctgtttcagcatattaatggatgcatttcaactggaaaagaagtatgcttttattttattca |
3594499 |
T |
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| Q |
508 |
cacgtttcagttttctgtcattttgtcattacagttttataacatggacttgatgtgatgcatgtccataattatcaggca |
588 |
Q |
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| T |
3594498 |
cacgtttcagttttctgtcatcttgtcattacagttttataacatggacttgatgtgatgcatgtccataattatcaggca |
3594418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 191 - 330
Target Start/End: Complemental strand, 28935164 - 28935025
Alignment:
| Q |
191 |
ttgttgttacaggagtgggaaggaagaacaaatattgccatgtctaacactgttacaacagaaattcgtggaagtctgatgcatatgtctatcggtaaaa |
290 |
Q |
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| T |
28935164 |
ttgttgttgcaggatttggaaggaagaatgaatattgccatgtctaacagtgttacaacagaaattcgtggatgtgtgaaagagatggccattggtaaaa |
28935065 |
T |
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| Q |
291 |
ctaaaactactgggaaagtcgaccgagccactgttgagaa |
330 |
Q |
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| T |
28935064 |
ctaaaactaatgacaaagccgaccgagccactgttgagaa |
28935025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 360 - 504
Target Start/End: Original strand, 35714082 - 35714226
Alignment:
| Q |
360 |
attcattttcaataattttaatacaactaacacaaaaattccctcaggcaattgatctcagaacgcgcatggctttatttaagatgatgaacaataatct |
459 |
Q |
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|||||||||||||| ||| || ||||||||| |||| || | |||||||||||| |||||||||||||| |||||| |||||| | || | | | |
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| T |
35714082 |
attcattttcaatattttgcatgcaactaacaataaaactctcctaggcaattgatcccagaacgcgcatggttttattcaagatgctcaatagaggtgt |
35714181 |
T |
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| Q |
460 |
gtttcagcatattaatggatgcatttcaactggaaaagaagtatg |
504 |
Q |
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| T |
35714182 |
gtttcaagatatgaatggatgcatttcaactggaaaggaagtatg |
35714226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 359 - 504
Target Start/End: Complemental strand, 28934829 - 28934684
Alignment:
| Q |
359 |
aattcattttcaataattttaatacaactaacacaaaaattccctcaggcaattgatctcagaacgcgcatggctttatttaagatgatgaacaataatc |
458 |
Q |
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| T |
28934829 |
aattcattctcaataattcttgtgcaactaacgctaaaaatcccctaggcaattgatcccagaacgcgcatggaaatatacaagatgatgaacaaacgtt |
28934730 |
T |
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| Q |
459 |
tgtttcagcatattaatggatgcatttcaactggaaaagaagtatg |
504 |
Q |
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| T |
28934729 |
ggtttcaagattccaatggatgcattttaactagaaaagaagtatg |
28934684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 473 - 504
Target Start/End: Complemental strand, 28934427 - 28934396
Alignment:
| Q |
473 |
aatggatgcatttcaactggaaaagaagtatg |
504 |
Q |
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| T |
28934427 |
aatggatgcatttcaactggaaaagaagtatg |
28934396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 37 - 105
Target Start/End: Original strand, 35713261 - 35713329
Alignment:
| Q |
37 |
tcattcttccaccctccaacctctctccaatcgcaaccagaggttctctaatcgcattcgtgcttctcc |
105 |
Q |
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| T |
35713261 |
tcattcttcaacacttcaacctctctccaatcgtaaccagaaattctcacatcatattcgtgcttctcc |
35713329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 190 - 504
Target Start/End: Complemental strand, 8491229 - 8490889
Alignment:
| Q |
190 |
tttgttgttacaggagtgggaaggaagaacaaatattgccatgtctaacactgttacaacagaaattcgtggaagtctgatgcatatgtctatcggtaaa |
289 |
Q |
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| T |
8491229 |
tttgttgttgcaggagtgggaaggaagaacaaatattgccatgtctaacactgtcaccacagaaattcgtggaagtctgatgcatatgtctatcggtaaa |
8491130 |
T |
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| Q |
290 |
actaaaactactgggaaa-----gtcgaccgagccactgttgagaacgtatttaaccaataatttt------------gttcttac------------aa |
360 |
Q |
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| T |
8491129 |
actaaaactactaggaaattaaagtcgaccga---actgttgagaacgtatgtaaccaatcattttttcataagcattgttcttacttaagtttatctaa |
8491033 |
T |
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| Q |
361 |
ttcattttcaataattttaatacaactaacacaaaaattccctcaggcaattgatctcagaacgcgcatggctttatttaagatgatgaacaataatctg |
460 |
Q |
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| T |
8491032 |
ttcattttcaatcatttgaatacaactaacacaaaaattccctcaggcaattgatctcaggacgcgcatggctttatttaagatgatgaacaataatctg |
8490933 |
T |
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| Q |
461 |
tttcagcatattaatggatgcatttcaactggaaaagaagtatg |
504 |
Q |
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| T |
8490932 |
tttcagcatattaatggatgcatttcaactggaaaagaagtatg |
8490889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 511 - 562
Target Start/End: Complemental strand, 8490857 - 8490804
Alignment:
| Q |
511 |
gtttcagttttctgtcattttgtcattacagttt--tataacatggacttgatg |
562 |
Q |
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| T |
8490857 |
gtttcagttttctgtcatcttgtcattacagttttatataacatggacttgatg |
8490804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0361 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0361
Description:
Target: scaffold0361; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 443
Target Start/End: Complemental strand, 5191 - 5108
Alignment:
| Q |
360 |
attcattttcaataattttaatacaactaacacaaaaattccctcaggcaattgatctcagaacgcgcatggctttatttaaga |
443 |
Q |
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|||||||||||||||||| || ||| ||||| ||||||||| ||||||| |||| |||||||||| ||||||||| |||| |
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| T |
5191 |
attcattttcaataatttgtatgcaaacaacactaaaattcccctaggcaatggatcctagaacgcgcaaggctttattcaaga |
5108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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