View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13763_low_3 (Length: 835)

Name: NF13763_low_3
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13763_low_3
NF13763_low_3
[»] chr8 (8 HSPs)
chr8 (44-825)||(33004401-33005181)
chr8 (495-816)||(3707935-3708256)
chr8 (504-816)||(3769948-3770260)
chr8 (495-816)||(3701168-3701489)
chr8 (493-805)||(3719455-3719767)
chr8 (504-823)||(3777618-3777934)
chr8 (294-345)||(16530214-16530265)
chr8 (750-823)||(1969116-1969189)
[»] chr4 (4 HSPs)
chr4 (291-357)||(19297001-19297067)
chr4 (226-315)||(20727137-20727226)
chr4 (4-43)||(21263724-21263763)
chr4 (293-394)||(43690953-43691055)
[»] chr1 (6 HSPs)
chr1 (290-384)||(31285312-31285406)
chr1 (292-352)||(3750633-3750693)
chr1 (284-393)||(40894740-40894848)
chr1 (290-324)||(472886-472920)
chr1 (293-331)||(25246627-25246665)
chr1 (226-351)||(38504246-38504369)
[»] chr5 (5 HSPs)
chr5 (294-351)||(27388854-27388911)
chr5 (747-780)||(39476555-39476588)
chr5 (747-778)||(39487510-39487541)
chr5 (759-805)||(11292348-11292394)
chr5 (747-780)||(39484306-39484339)
[»] chr7 (6 HSPs)
chr7 (758-801)||(41562615-41562658)
chr7 (296-393)||(5660696-5660794)
chr7 (308-362)||(40242879-40242933)
chr7 (756-801)||(41511442-41511487)
chr7 (761-799)||(48398546-48398584)
chr7 (756-801)||(48532784-48532829)
[»] chr3 (6 HSPs)
chr3 (293-350)||(10515513-10515571)
chr3 (293-362)||(25651298-25651368)
chr3 (284-393)||(31120289-31120397)
chr3 (291-331)||(33271863-33271903)
chr3 (4-43)||(42029426-42029465)
chr3 (285-350)||(46246933-46246998)
[»] chr2 (2 HSPs)
chr2 (293-350)||(11299983-11300039)
chr2 (4-43)||(28218967-28219006)
[»] chr6 (3 HSPs)
chr6 (756-800)||(845016-845060)
chr6 (756-800)||(870300-870344)
chr6 (291-351)||(10831829-10831889)


Alignment Details
Target: chr8 (Bit Score: 718; Significance: 0; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 718; E-Value: 0
Query Start/End: Original strand, 44 - 825
Target Start/End: Original strand, 33004401 - 33005181
Alignment:
Q  44 tttagttaaaaacacaatataacataagattccgattcttcatagagaaccaagaaacatggattgtttcttctagtcacctaaaatgnnnnnnncactc 143  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||       |||||    
T  33004401 tttagttaaaaacacaatataacataagattccgattctttatagagaaccaagaaacatggattgtttcttctagtcacctaaaatgaatttttcactc 33004500  T
Q  144 tcgcacacattctattattccaccaatacttgattaaaaatgtttttgaacatccaattttccctacatctgtatagttttgatcacatccaaaattgtg 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33004501 tcgcacacattctattattccaccaatacttgattaaaaatgttttt-aacatccaattttccctacatctgtatagttttgatcacatccaaaattgtg 33004599  T
Q  244 gttaactcaattgactatacagttaatttagatcacgtgcaaaattatgaaattgtggttaattatgtagttgaattaaccacaattttgaccgtggatt 343  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  |    
T  33004600 gttaactcaattgactatacagttaatttagatcacgtgcaaaattatgaaattgtggttaattatgtcgttgaattaaccacaattttgaccgtggtct 33004699  T
Q  344 gaattaacaatctactaaaatgatttaaccatacttttgaacgtaattaatatgtcgcagatgtagaaaaaattagtctctaaataaaattaccaatact 443  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33004700 gaattaacaatctactaaaatgatttaaccatacttttgaacgtaattaatatgtcgcagatgtagaaaaaattagtctctaaataaaattaccaatact 33004799  T
Q  444 tgtttttactttgcattgctttccattcgaatggcaagttgagaaagtacccttgtggaagacccatcttctgctaatgcacaagtagaagcatatttaa 543  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33004800 tgtttttactttgcattgctttccattcgaatggcaagttgagaaagtacccttgtggaagacccatcttctgctaatgcacaagtagaagcatatttaa 33004899  T
Q  544 gctcttcaattctttgttcaatttcactcctttcttcaccaagcattaaatctctaatcaccttagcaatttcct-ctctttctgcaatgccactctcat 642  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  33004900 gctcttcaattctttgttcaatttcactcctttcttcaccaagcattaaatctctaatcaccttagcaatttcctcctctttctgcaatgccactctcat 33004999  T
Q  643 taaattttaccttcaaacccaccttgagtccctctattaacaaaatagcatttaatctttgctcgccaaacaacggccaagttatcattggcactcccga 742  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  33005000 t-aattttaccttcaaacccaccttgagtccctctattaacaaaatagcattcaatctttgctcgccaaacaacggccaagttatcattggcactcccga 33005098  T
Q  743 cgcaatgctctcgagtgttgaattccaaccacaatgtgttaaaaatccaccagttgaagtgtggcttaggatttgagtctgtg 825  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33005099 cgcaatgctctcgagtgttgaattccaaccacaatgtgttaaaaatccaccagttgaagtgtggcttaggatttgagtctgtg 33005181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 170; E-Value: 9e-91
Query Start/End: Original strand, 495 - 816
Target Start/End: Complemental strand, 3708256 - 3707935
Alignment:
Q  495 cttgtggaagacccatcttctgctaatgcacaagtagaagcatatttaagctcttcaattctttgttcaatttcactcctttcttcaccaagcattaaat 594  Q
    ||||| || |||||||||||||||||||||||||  | | ||| ||||||||||||||||||||||  ||| ||||||| |||||| || ||||||| ||    
T  3708256 cttgtagaggacccatcttctgctaatgcacaagctgcatcatctttaagctcttcaattctttgtcgaatctcactccgttcttctccgagcattagat 3708157  T
Q  595 ctctaatcaccttagcaatttcctctctttctgcaatgccactctcattaaattttaccttcaaacccaccttgagtccctctattaacaaaatagcatt 694  Q
     ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| || |||||||||| ||  |||||||||||    
T  3708156 gtctaaccaccttagcaatttcctctctttctgcaatgccattctcattaaattttatcttcaaacccactttaagtccctctactattaaaatagcatt 3708057  T
Q  695 taatctttgctcgccaaacaacggccaagttatcattggcactcccgacgcaatgctctcgagtgttgaattccaaccacaatgtgttaaaaatccacca 794  Q
     | | |||| || |||||||| ||||||||||||||||||||||| ||| |||| ||||| || || ||||||||||||||||||||||||||||||||     
T  3708056 cattatttgatcaccaaacaatggccaagttatcattggcactccggacacaatactctcaagcgtcgaattccaaccacaatgtgttaaaaatccacct 3707957  T
Q  795 gttgaagtgtggcttaggattt 816  Q
    |||||| |||| ||||||||||    
T  3707956 gttgaattgtgacttaggattt 3707935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 165; E-Value: 8e-88
Query Start/End: Original strand, 504 - 816
Target Start/End: Original strand, 3769948 - 3770260
Alignment:
Q  504 gacccatcttctgctaatgcacaagtagaagcatatttaagctcttcaattctttgttcaatttcactcctttcttcaccaagcattaaatctctaatca 603  Q
    ||||||||| |||||||||||||||  |   ||| ||| ||||||||||||||||||  ||| ||||||| |||||| || ||||||| |||| ||| ||    
T  3769948 gacccatctcctgctaatgcacaagctgcttcatcttttagctcttcaattctttgtcgaatctcactccgttcttctccgagcattagatctttaacca 3770047  T
Q  604 ccttagcaatttcctctctttctgcaatgccactctcattaaattttaccttcaaacccaccttgagtccctctattaacaaaatagcatttaatctttg 703  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||| || |||||||||| ||  ||||||||||| | ||||||    
T  3770048 ccttagcaatttcctctctttctgcaatgtcattctcattaaattttatcttcaaacccactttaagtccctctactattaaaatagcattcattctttg 3770147  T
Q  704 ctcgccaaacaacggccaagttatcattggcactcccgacgcaatgctctcgagtgttgaattccaaccacaatgtgttaaaaatccaccagttgaagtg 803  Q
     || |||||||| |||||||||| |||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||| |||||| ||    
T  3770148 atcaccaaacaatggccaagttaccattggcactcccgacacaatactctcaagtgttgaattccaaccacaatgtgttaaaaatccacctgttgaattg 3770247  T
Q  804 tggcttaggattt 816  Q
    || ||||||||||    
T  3770248 tgacttaggattt 3770260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 162; E-Value: 5e-86
Query Start/End: Original strand, 495 - 816
Target Start/End: Complemental strand, 3701489 - 3701168
Alignment:
Q  495 cttgtggaagacccatcttctgctaatgcacaagtagaagcatatttaagctcttcaattctttgttcaatttcactcctttcttcaccaagcattaaat 594  Q
    ||||| || |||||||||||||||||||||||||  | | ||| ||||||||||||||||||||||  ||| ||||| | |||||| || ||||||| ||    
T  3701489 cttgtagaggacccatcttctgctaatgcacaagctgcatcatctttaagctcttcaattctttgtcgaatctcacttcgttcttctccgagcattagat 3701390  T
Q  595 ctctaatcaccttagcaatttcctctctttctgcaatgccactctcattaaattttaccttcaaacccaccttgagtccctctattaacaaaatagcatt 694  Q
    || ||| |||||||||||||||| ||||||||||||||||| ||||||||||||| | |||||||||||| |||||||||||| | ||||||| ||||||    
T  3701389 ctttaaccaccttagcaatttccactctttctgcaatgccattctcattaaatttgatcttcaaacccactttgagtccctctgtcaacaaaacagcatt 3701290  T
Q  695 taatctttgctcgccaaacaacggccaagttatcattggcactcccgacgcaatgctctcgagtgttgaattccaaccacaatgtgttaaaaatccacca 794  Q
     | ||||||||||||||| || ||||| |||||||||||||||||  || | || ||||| ||||| ||||||||||||||||||||||||||||||||     
T  3701289 cattctttgctcgccaaataatggccatgttatcattggcactcctaacacgatactctcaagtgtcgaattccaaccacaatgtgttaaaaatccaccg 3701190  T
Q  795 gttgaagtgtggcttaggattt 816  Q
    ||||||||||| || |||||||    
T  3701189 gttgaagtgtgactaaggattt 3701168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 157; E-Value: 5e-83
Query Start/End: Original strand, 493 - 805
Target Start/End: Complemental strand, 3719767 - 3719455
Alignment:
Q  493 cccttgtggaagacccatcttctgctaatgcacaagtagaagcatatttaagctcttcaattctttgttcaatttcactcctttcttcaccaagcattaa 592  Q
    ||||||| || |||||||||||||||||||||||||  | | ||| |||||||||||| |||||||||  ||| ||||||| || ||| || |||||||     
T  3719767 cccttgtagaggacccatcttctgctaatgcacaagctgcatcatttttaagctcttccattctttgtcgaatctcactccgtttttctccgagcattag 3719668  T
Q  593 atctctaatcaccttagcaatttcctctctttctgcaatgccactctcattaaattttaccttcaaacccaccttgagtccctctattaacaaaatagca 692  Q
    |||  ||| |||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||| || |||||||||| ||  |||||||||    
T  3719667 atccttaaccaccttagcaatttcctctctttctgcaattccattctcattaaattttatcttcaaacccactttaagtccctctactattaaaatagca 3719568  T
Q  693 tttaatctttgctcgccaaacaacggccaagttatcattggcactcccgacgcaatgctctcgagtgttgaattccaaccacaatgtgttaaaaatccac 792  Q
    || | |||||| || |||||||| ||||||||||||||||||||||| ||| |||| ||||| || || |||||||||||||||||||||||||||||||    
T  3719567 ttcattctttgatcaccaaacaatggccaagttatcattggcactccggacacaatactctcaagcgtcgaattccaaccacaatgtgttaaaaatccac 3719468  T
Q  793 cagttgaagtgtg 805  Q
    | |||||||||||    
T  3719467 ctgttgaagtgtg 3719455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 150; E-Value: 7e-79
Query Start/End: Original strand, 504 - 823
Target Start/End: Original strand, 3777618 - 3777934
Alignment:
Q  504 gacccatcttctgctaatgcacaagtagaagcatatttaagctcttcaattctttgttcaatttcactcctttcttcaccaagcattaaatctctaatca 603  Q
    |||||||||||||||||||||| || || | ||| |||||| |||||||||||||||  ||| ||||| | ||||||||| | ||||| |||||||||||    
T  3777618 gacccatcttctgctaatgcaccagcagcaacatctttaagatcttcaattctttgtcgaatctcacttcgttcttcacctatcattagatctctaatca 3777717  T
Q  604 ccttagcaatttcctctctttctgcaatgccactctcattaaattttaccttcaaacccaccttgagtccctctattaacaaaatagcatttaatctttg 703  Q
    ||||||||||||| |||||||| || |||||| ||||||||||| ||||||||||||| ||   |||||||||   |||||| |||||||| | ||||||    
T  3777718 ccttagcaatttcatctctttcagctatgccaatctcattaaatcttaccttcaaaccaactccgagtccctc---taacaacatagcattcattctttg 3777814  T
Q  704 ctcgccaaacaacggccaagttatcattggcactcccgacgcaatgctctcgagtgttgaattccaaccacaatgtgttaaaaatccaccagttgaagtg 803  Q
    |||   |||||| |||||||||||||||||||||||  || |||  ||||| ||||| |||||||||||||||||||||||||||||||| |||||| ||    
T  3777815 ctctgaaaacaatggccaagttatcattggcactccgaacacaagactctccagtgtcgaattccaaccacaatgtgttaaaaatccaccggttgaaatg 3777914  T
Q  804 tggcttaggatttgagtctg 823  Q
    ||||||||||||||||||||    
T  3777915 tggcttaggatttgagtctg 3777934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 294 - 345
Target Start/End: Original strand, 16530214 - 16530265
Alignment:
Q  294 aattgtggttaattatgtagttgaattaaccacaattttgaccgtggattga 345  Q
    ||||||||||||| ||||| |||||| ||||||||||||||| ||| |||||    
T  16530214 aattgtggttaatcatgtacttgaatcaaccacaattttgactgtgaattga 16530265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 750 - 823
Target Start/End: Complemental strand, 1969189 - 1969116
Alignment:
Q  750 ctctcgagtgttgaattccaaccacaatgtgttaaaaatccaccagttgaagtgtggcttaggatttgagtctg 823  Q
    ||||| || ||||||||||| |||||||| || || ||||||||| ||||  |||| |||||||||||| ||||    
T  1969189 ctctcaagggttgaattccagccacaatgagtcaagaatccaccaattgagttgtgacttaggatttgaatctg 1969116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 9e-20; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 291 - 357
Target Start/End: Original strand, 19297001 - 19297067
Alignment:
Q  291 tgaaattgtggttaattatgtagttgaattaaccacaattttgaccgtggattgaattaacaatcta 357  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||| |||||    
T  19297001 tgaaattgtggttaatcatgtagttgaattaaccagaattttgaccgtgaattgaattaaccatcta 19297067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 226 - 315
Target Start/End: Original strand, 20727137 - 20727226
Alignment:
Q  226 atcacatccaaaattgtggttaactcaattgactatacagttaatttagatcacgtgcaaaattatgaaattgtggttaattatgtagtt 315  Q
    ||||||| ||||||||||||||| ||| |||| ||||  |||||||||||||||||  |||||| ||||||| | ||| || ||||||||    
T  20727137 atcacatgcaaaattgtggttaattcacttgagtatatggttaatttagatcacgttgaaaattgtgaaattatagttcatcatgtagtt 20727226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 21263724 - 21263763
Alignment:
Q  4 tccattccattccaccaaacaccaccaatccaaacatagc 43  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  21263724 tccattccattccaccacacaccaccaatccaaacatagc 21263763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 293 - 394
Target Start/End: Complemental strand, 43691055 - 43690953
Alignment:
Q  293 aaattgtggttaatt-atgtagttgaattaaccacaattttgaccgtggattgaattaacaatctactaaaatgatttaaccatacttttgaacgtaatt 391  Q
    ||||||||||||||| |  ||||||||| ||||| ||||||||||||  |||||||||||||  |||  | |||| ||||||||| |||| ||| | |||    
T  43691055 aaattgtggttaattcaaatagttgaataaaccataattttgaccgtcaattgaattaacaaattacacatatgaattaaccatattttttaacatgatt 43690956  T
Q  392 aat 394  Q
    |||    
T  43690955 aat 43690953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 290 - 384
Target Start/End: Original strand, 31285312 - 31285406
Alignment:
Q  290 atgaaattgtggttaattatgtagttgaattaaccacaattttgaccgtggattgaattaacaatctactaaaatgatttaaccatacttttgaa 384  Q
    |||||||||||||||||||||||||||||||||||| |||| |||| ||| ||||| | ||  ||||||| || |||||||| || | |||||||    
T  31285312 atgaaattgtggttaattatgtagttgaattaaccataattatgactgtgaattgattcaatcatctacttaactgatttaatcacatttttgaa 31285406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 292 - 352
Target Start/End: Original strand, 3750633 - 3750693
Alignment:
Q  292 gaaattgtggttaattatgtagttgaattaaccacaattttgaccgtggattgaattaaca 352  Q
    ||||||||||||||| ||||| ||||||||||||||| ||||||| || ||||||||||||    
T  3750633 gaaattgtggttaataatgtaattgaattaaccacaactttgaccttgaattgaattaaca 3750693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 284 - 393
Target Start/End: Original strand, 40894740 - 40894848
Alignment:
Q  284 aaaattatgaaattgtggttaattatgtagttgaattaaccacaattttgaccgtggattgaattaacaatctactaaaatgatttaaccatacttttga 383  Q
    |||||| ||| |||| |||||| ||||||||||||||||||| || |||||| ||| ||| ||||||| ||||||| || |||  |||||| | |||| |    
T  40894740 aaaattgtgagattgcggttaactatgtagttgaattaaccataa-tttgactgtgaattaaattaaccatctactcaactgaaataaccacatttttta 40894838  T
Q  384 acgtaattaa 393  Q
    |||| |||||    
T  40894839 acgtgattaa 40894848  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 290 - 324
Target Start/End: Original strand, 472886 - 472920
Alignment:
Q  290 atgaaattgtggttaattatgtagttgaattaacc 324  Q
    ||||||||||||||||| |||||||||||||||||    
T  472886 atgaaattgtggttaatcatgtagttgaattaacc 472920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 293 - 331
Target Start/End: Complemental strand, 25246665 - 25246627
Alignment:
Q  293 aaattgtggttaattatgtagttgaattaaccacaattt 331  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  25246665 aaattgtggttaagcatgtagttgaattaaccacaattt 25246627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 226 - 351
Target Start/End: Complemental strand, 38504369 - 38504246
Alignment:
Q  226 atcacatccaaaattgtggttaactcaattgactatacagttaatttagatcacgtgcaaaattatgaaattgtggttaattatgtagttgaattaacca 325  Q
    ||||||| ||||||| ||||||| ||| |||| ||||   ||| ||||||||||||  ||||||  |||||| |  ||||| ||| ||||||| ||||||    
T  38504369 atcacatgcaaaattatggttaattcagttgaatatatgattagtttagatcacgttgaaaatt--gaaattattattaatcatgaagttgaactaacca 38504272  T
Q  326 caattttgaccgtggattgaattaac 351  Q
    ||||||||||   | |||||||||||    
T  38504271 caattttgactacgaattgaattaac 38504246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 294 - 351
Target Start/End: Complemental strand, 27388911 - 27388854
Alignment:
Q  294 aattgtggttaattatgtagttgaattaaccacaattttgaccgtggattgaattaac 351  Q
    ||||||||||||| ||||||||| ||||||||||||||||| |||| | |||||||||    
T  27388911 aattgtggttaatcatgtagttggattaaccacaattttgatcgtgaactgaattaac 27388854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 747 - 780
Target Start/End: Complemental strand, 39476588 - 39476555
Alignment:
Q  747 atgctctcgagtgttgaattccaaccacaatgtg 780  Q
    ||||||||||||||||||||||||||||||||||    
T  39476588 atgctctcgagtgttgaattccaaccacaatgtg 39476555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 747 - 778
Target Start/End: Complemental strand, 39487541 - 39487510
Alignment:
Q  747 atgctctcgagtgttgaattccaaccacaatg 778  Q
    ||||||||||||||||||||||||||||||||    
T  39487541 atgctctcgagtgttgaattccaaccacaatg 39487510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 759 - 805
Target Start/End: Original strand, 11292348 - 11292394
Alignment:
Q  759 gttgaattccaaccacaatgtgttaaaaatccaccagttgaagtgtg 805  Q
    |||||||||||||||||||||| ||| |||||||| ||||| |||||    
T  11292348 gttgaattccaaccacaatgtgataagaatccacctgttgatgtgtg 11292394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 747 - 780
Target Start/End: Complemental strand, 39484339 - 39484306
Alignment:
Q  747 atgctctcgagtgttgaattccaaccacaatgtg 780  Q
    ||||||||||||||||||||||||||| ||||||    
T  39484339 atgctctcgagtgttgaattccaaccataatgtg 39484306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000008; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 758 - 801
Target Start/End: Complemental strand, 41562658 - 41562615
Alignment:
Q  758 tgttgaattccaaccacaatgtgttaaaaatccaccagttgaag 801  Q
    ||||||||||||||||||||| | ||||||||||||||||||||    
T  41562658 tgttgaattccaaccacaatgagataaaaatccaccagttgaag 41562615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 296 - 393
Target Start/End: Complemental strand, 5660794 - 5660696
Alignment:
Q  296 ttgtggttaatt-atgtagttgaattaaccacaattttgaccgtggattgaattaacaatctactaaaatgatttaaccatacttttgaacgtaattaa 393  Q
    |||||||||||| || ||||||||||||||| ||||||  ||||| |||||| |||||||||| | || | | ||||||| |||||| ||||| |||||    
T  5660794 ttgtggttaattcatatagttgaattaaccagaattttagccgtgaattgaaataacaatctagttaactaaattaaccacactttttaacgtgattaa 5660696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 308 - 362
Target Start/End: Complemental strand, 40242933 - 40242879
Alignment:
Q  308 atgtagttgaattaaccacaattttgaccgtggattgaattaacaatctactaaa 362  Q
    |||||||||||||||||||||||||||  ||| ||||||||||| || |||||||    
T  40242933 atgtagttgaattaaccacaattttgattgtgaattgaattaaccatttactaaa 40242879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 756 - 801
Target Start/End: Complemental strand, 41511487 - 41511442
Alignment:
Q  756 agtgttgaattccaaccacaatgtgttaaaaatccaccagttgaag 801  Q
    ||||||||||||||||||||||| || |||||||||||| ||||||    
T  41511487 agtgttgaattccaaccacaatgagtcaaaaatccaccaattgaag 41511442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 761 - 799
Target Start/End: Complemental strand, 48398584 - 48398546
Alignment:
Q  761 tgaattccaaccacaatgtgttaaaaatccaccagttga 799  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  48398584 tgaattccaaccacaatgagttaaaaacccaccagttga 48398546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 756 - 801
Target Start/End: Complemental strand, 48532829 - 48532784
Alignment:
Q  756 agtgttgaattccaaccacaatgtgttaaaaatccaccagttgaag 801  Q
    |||||||||||||| |||||||||||||| ||||| ||| ||||||    
T  48532829 agtgttgaattccatccacaatgtgttaagaatcctccaattgaag 48532784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 293 - 350
Target Start/End: Complemental strand, 10515571 - 10515513
Alignment:
Q  293 aaattgtggttaatt-atgtagttgaattaaccacaattttgaccgtggattgaattaa 350  Q
    ||||||||||||||| |||||||||||||||| | |||||||| |||| ||||||||||    
T  10515571 aaattgtggttaatttatgtagttgaattaacgataattttgatcgtgaattgaattaa 10515513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 293 - 362
Target Start/End: Complemental strand, 25651368 - 25651298
Alignment:
Q  293 aaattgtggttaatt-atgtagttgaattaaccacaattttgaccgtggattgaattaacaatctactaaa 362  Q
    ||||||| ||||||| ||| |||| ||||||||| ||||||||| ||| ||||||||||| ||||||||||    
T  25651368 aaattgtcgttaattcatgcagttaaattaaccagaattttgactgtgaattgaattaaccatctactaaa 25651298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 284 - 393
Target Start/End: Original strand, 31120289 - 31120397
Alignment:
Q  284 aaaattatgaaattgtggttaattatgtagttgaattaaccacaattttgaccgtggattgaattaacaatctactaaaatgatttaaccatacttttga 383  Q
    ||||||||||||||||| ||||| || || ||||||| | ||||||||| || ||| |||||||||||||| |||| || ||| |||| |||| || | |    
T  31120289 aaaattatgaaattgtgattaat-atataattgaatttatcacaattttaacagtgaattgaattaacaatttactcaattgaattaatcatatttctta 31120387  T
Q  384 acgtaattaa 393  Q
    | ||||||||    
T  31120388 aagtaattaa 31120397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 291 - 331
Target Start/End: Original strand, 33271863 - 33271903
Alignment:
Q  291 tgaaattgtggttaattatgtagttgaattaaccacaattt 331  Q
    |||||||||||||||| ||||||||||||| ||||||||||    
T  33271863 tgaaattgtggttaatcatgtagttgaatttaccacaattt 33271903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 42029426 - 42029465
Alignment:
Q  4 tccattccattccaccaaacaccaccaatccaaacatagc 43  Q
    |||||||||||||||||  |||||||||||||||||||||    
T  42029426 tccattccattccaccactcaccaccaatccaaacatagc 42029465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 285 - 350
Target Start/End: Complemental strand, 46246998 - 46246933
Alignment:
Q  285 aaattatgaaattgtggttaattatgtagttgaattaaccacaattttgaccgtggattgaattaa 350  Q
    ||||| || |||| |||||| ||| ||||||||||||||||||||||| || ||| ||| ||||||    
T  46246998 aaattgtgcaattatggttagttaggtagttgaattaaccacaattttaactgtgaattaaattaa 46246933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 293 - 350
Target Start/End: Original strand, 11299983 - 11300039
Alignment:
Q  293 aaattgtggttaattatgtagttgaattaaccacaattttgaccgtggattgaattaa 350  Q
    |||||||||||||| ||||| ||||||||| |||||||||||||||| ||| ||||||    
T  11299983 aaattgtggttaat-atgtaattgaattaatcacaattttgaccgtgaatttaattaa 11300039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 43
Target Start/End: Complemental strand, 28219006 - 28218967
Alignment:
Q  4 tccattccattccaccaaacaccaccaatccaaacatagc 43  Q
    |||||||||||||||||  |||||||||||||||||||||    
T  28219006 tccattccattccaccactcaccaccaatccaaacatagc 28218967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 756 - 800
Target Start/End: Original strand, 845016 - 845060
Alignment:
Q  756 agtgttgaattccaaccacaatgtgttaaaaatccaccagttgaa 800  Q
    ||||||||||||||||||||||| |||||||| |||||| |||||    
T  845016 agtgttgaattccaaccacaatgagttaaaaacccaccaattgaa 845060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 756 - 800
Target Start/End: Original strand, 870300 - 870344
Alignment:
Q  756 agtgttgaattccaaccacaatgtgttaaaaatccaccagttgaa 800  Q
    ||||||||||||||||||||||| |||||||| |||||| |||||    
T  870300 agtgttgaattccaaccacaatgagttaaaaacccaccaattgaa 870344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 291 - 351
Target Start/End: Complemental strand, 10831889 - 10831829
Alignment:
Q  291 tgaaattgtggttaattatgtagttgaattaaccacaattttgaccgtggattgaattaac 351  Q
    ||||||| |||||||| |||||||||||||||||| |||||||| | || |||| ||||||    
T  10831889 tgaaattttggttaatcatgtagttgaattaaccataattttgagcatgaattgtattaac 10831829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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