View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_low_32 (Length: 552)
Name: NF13763_low_32
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 8 - 533
Target Start/End: Complemental strand, 20489591 - 20489071
Alignment:
| Q |
8 |
tgaaatgaacctaaagaggaagcagtgagatattaatgggccatagtaaatcaatcctagtcaaaagaaattaccctccaagcaattacttttaatttgt |
107 |
Q |
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| T |
20489591 |
tgaaatgaacctaaagaggaagcagtgagatattaatgggccatagtaaatcaatcctagtcaaaagaaattaccctccaagcaattacttttaatttgt |
20489492 |
T |
|
| Q |
108 |
taaa-gagtgactttgaagctctcaaaattatggtgggatctgtgtaataattattcttcatctgtataatgatataaacgcaggaaggttggttagatt |
206 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
20489491 |
taaaagagtgactttgaagctctcaaaattatggtgggatctctttaataattattcttcatctgtataatgatataaacacaggaaggttggttagatt |
20489392 |
T |
|
| Q |
207 |
gtatatgtacatacatgctcatcatggccatgaccatgaccatgaccattggatgtatatatccatagccaacaacctactcaacactcagttccatctc |
306 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20489391 |
gtatatctacatacatgctcatcatggccatgaccatgaccat------tggatgtatatatccatagccaacaacctactcaacactcagttccatctc |
20489298 |
T |
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| Q |
307 |
aaaccaattaaaacatatagaatccaatgaaacacagctctttgctccccacaatctctaacacaaacttctggtgttaacaccattagaaggattaaag |
406 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
20489297 |
aaaccaattgaaacatatagaatccaatgaaacacagctctttgctccccacaatctctaacacaaacttctggtgttaacaccatgagaaggataaaag |
20489198 |
T |
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| Q |
407 |
cactgttcccacttacatataccccactttcttctatatggtaacggagacatgaacaccggacacagacacaatacgtaggcatatgtagctctgtagc |
506 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| || |
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| T |
20489197 |
cactgttcccacttacataaaccccactttcttctatatggtaacggagacatgagcaccggacacagacacaatacgtagacatatgtagctctgttgc |
20489098 |
T |
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| Q |
507 |
acctacagttgttattgaaggcgtgtc |
533 |
Q |
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| ||||||||||||||||||||||||| |
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| T |
20489097 |
atctacagttgttattgaaggcgtgtc |
20489071 |
T |
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