View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13763_low_34 (Length: 544)

Name: NF13763_low_34
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13763_low_34
NF13763_low_34
[»] scaffold0425 (2 HSPs)
scaffold0425 (176-526)||(14010-14360)
scaffold0425 (12-110)||(14426-14524)
[»] chr3 (20 HSPs)
chr3 (176-526)||(6851578-6851928)
chr3 (12-110)||(6851993-6852091)
chr3 (390-499)||(6724594-6724703)
chr3 (209-350)||(6724713-6724854)
chr3 (402-503)||(6897466-6897567)
chr3 (402-505)||(6879894-6879997)
chr3 (403-497)||(6166277-6166371)
chr3 (245-354)||(6594001-6594110)
chr3 (425-523)||(6593881-6593979)
chr3 (12-109)||(6725014-6725111)
chr3 (406-498)||(6242704-6242796)
chr3 (431-514)||(6235454-6235537)
chr3 (413-498)||(6914478-6914561)
chr3 (390-491)||(6256588-6256689)
chr3 (209-342)||(6242542-6242677)
chr3 (176-209)||(6594226-6594259)
chr3 (63-110)||(6594325-6594372)
chr3 (209-271)||(6166118-6166179)
chr3 (360-393)||(6593894-6593927)
chr3 (15-102)||(6165835-6165920)


Alignment Details
Target: scaffold0425 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 176 - 526
Target Start/End: Complemental strand, 14360 - 14010
Alignment:
Q  176 cacagttaaaggtcatcctcgccttataattggtacaaagtcacatgaataacaaagagaatattatctggtgaactaaatgaaaaaagaattacaagca 275  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14360 cacagttaaaggtcatcctcaccttataattggtacaaagtcacatgaataacaaagagaatattatctggtgaactaaatgaaaaaagaattacaagca 14261  T
Q  276 ccacaaactgcagcgtgtacacatccaaatgcagggcctaaaattagaccatacctgagctctgtggcggtggaacaaaatagaatggtttcaggtcaca 375  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  14260 ccacaaactgcagcgtgtacacatccaaatgcagggcgtaaaattagaccatatctgagctctgtggcggtggaacaaaatagaatggtttcaggtcaca 14161  T
Q  376 tataagtggtcaggaacagcggcattcttctggtcgtgtgtgagaggagtggttgtgccattcatttggtcacgaatgagaatggatggcaacaaaatag 475  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14160 tgtaagtggtcaggaacagcggcattcttctggtcgtgtgtgagaggagtggttgtgccattcatttggtcacaaatgagaatggatggcaacaaaatag 14061  T
Q  476 catggtttcaggtcacatgtaagtggtcaggaacgccatcggagcataaac 526  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  14060 catggtttcaggtcacatgtaagtggtcaggaacgccatcggagcgtaaac 14010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 12 - 110
Target Start/End: Complemental strand, 14524 - 14426
Alignment:
Q  12 gaagaatattatcagtcacaaggaatttgatttgatcatgatacaagtatcattagaaaacaccaaatttcactttgacaacaaagtggcacgaccttc 110  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14524 gaagaatattatcagtcacatggaatttgattagatcatgatacaagtatcattagaaaacaccaaatttcactttgacaacaaagtggcacgaccttc 14426  T

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Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 176 - 526
Target Start/End: Complemental strand, 6851928 - 6851578
Alignment:
Q  176 cacagttaaaggtcatcctcgccttataattggtacaaagtcacatgaataacaaagagaatattatctggtgaactaaatgaaaaaagaattacaagca 275  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6851928 cacagttaaaggtcatcctcaccttataattggtacaaagtcacatgaataacaaagagaatattatctggtgaactaaatgaaaaaagaattacaagca 6851829  T
Q  276 ccacaaactgcagcgtgtacacatccaaatgcagggcctaaaattagaccatacctgagctctgtggcggtggaacaaaatagaatggtttcaggtcaca 375  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6851828 ccacaaactgcagcgtgtacacatccaaatgcagggtctaaaattagaccatacctgagctctgtggcggtggaacaaaatagaatggtttcaggtcaca 6851729  T
Q  376 tataagtggtcaggaacagcggcattcttctggtcgtgtgtgagaggagtggttgtgccattcatttggtcacgaatgagaatggatggcaacaaaatag 475  Q
    | |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||    
T  6851728 tgtaagtggtcaggaacagcagcattcttctggtcgtgtgtgagaggagtggtggtgccattcatctggtcacaaatgagaatggatggcaacaaaatag 6851629  T
Q  476 catggtttcaggtcacatgtaagtggtcaggaacgccatcggagcataaac 526  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  6851628 catggtttcaggtcacatgtaactggtcaggaacgccatcggagcataaac 6851578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 12 - 110
Target Start/End: Complemental strand, 6852091 - 6851993
Alignment:
Q  12 gaagaatattatcagtcacaaggaatttgatttgatcatgatacaagtatcattagaaaacaccaaatttcactttgacaacaaagtggcacgaccttc 110  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  6852091 gaagaatattatcagtcacaaggaatttgattagatcatgatacaagtatcattagaaaacaccaaatttcactttgacaacaaaatggcacgaccttc 6851993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 390 - 499
Target Start/End: Complemental strand, 6724703 - 6724594
Alignment:
Q  390 aacagcggcattcttctggtcgtgtgtgagaggagtggttgtgccattcatttggtcacgaatgagaatggatggcaacaaaatagcatggtttcaggtc 489  Q
    ||||| |||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||  ||||||||||||||    
T  6724703 aacagaggcattcttctggttgtgcgtgagaggagtggttgtgccattcatctggtcacgaatgagattggatggcaacaaaatcacatggtttcaggtc 6724604  T
Q  490 acatgtaagt 499  Q
    ||||||||||    
T  6724603 acatgtaagt 6724594  T

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Target: chr3; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 209 - 350
Target Start/End: Complemental strand, 6724854 - 6724713
Alignment:
Q  209 tacaaagtcacatgaataacaaagagaatattatctggtgaactaaatgaaaaaagaattacaagcaccacaaactgcagcgtgtacacatccaaatgca 308  Q
    ||||||||||| |||||||||||||| ||||||||||||||| ||||| |||| |||||||||||||| |||||| ||||||||||||||||||||||      
T  6724854 tacaaagtcacgtgaataacaaagaggatattatctggtgaagtaaataaaaagagaattacaagcacaacaaaccgcagcgtgtacacatccaaatgtg 6724755  T
Q  309 gggcctaaaattagaccatacctgagctctgtggcggtggaa 350  Q
    |||| || ||||  ||||||| ||||||||||||||| ||||    
T  6724754 gggcatacaattgcaccatacttgagctctgtggcgggggaa 6724713  T

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Target: chr3; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 402 - 503
Target Start/End: Original strand, 6897466 - 6897567
Alignment:
Q  402 cttctggtcgtgtgtgagaggagtggttgtgccattcatttggtcacgaatgagaatggatggcaacaaaatagcatggtttcaggtcacatgtaagtgg 501  Q
    |||||||| ||||||||||| ||||||  |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||    
T  6897466 cttctggttgtgtgtgagagcagtggtcatgccattcatttggtcacgagtgagaatggatggcaacaaaagagcatggtttcaggtcacatgtaagcgg 6897565  T
Q  502 tc 503  Q
    ||    
T  6897566 tc 6897567  T

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Target: chr3; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 402 - 505
Target Start/End: Original strand, 6879894 - 6879997
Alignment:
Q  402 cttctggtcgtgtgtgagaggagtggttgtgccattcatttggtcacgaatgagaatggatggcaacaaaatagcatggtttcaggtcacatgtaagtgg 501  Q
    ||||| || |||||| |||| ||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||    
T  6879894 cttctagttgtgtgtaagagcagtggtcatgccattcatttggtcacgaatgagaatggatggcaacaaaagagcatggtttcaggtcacatgtaagcgg 6879993  T
Q  502 tcag 505  Q
    ||||    
T  6879994 tcag 6879997  T

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Target: chr3; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 403 - 497
Target Start/End: Original strand, 6166277 - 6166371
Alignment:
Q  403 ttctggtcgtgtgtgagaggagtggttgtgccattcatttggtcacgaatgagaatggatggcaacaaaatagcatggtttcaggtcacatgtaa 497  Q
    ||||||| |||||||||||  |||||  |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  6166277 ttctggttgtgtgtgagagcggtggtcatgccattcatttggtcacgaatgagaatggatggcaacaaaagatcatggtttcaggtcacatgtaa 6166371  T

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Target: chr3; HSP #8
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 245 - 354
Target Start/End: Complemental strand, 6594110 - 6594001
Alignment:
Q  245 ggtgaactaaatgaaaaaagaattacaagcaccacaaactgcagcgtgtacacatccaaatgcagggcctaaaattagaccatacctgagctctgtggcg 344  Q
    |||||| ||||| ||||||||||||||||||| ||||||  |||||||||||||||||||||  |||||||  |||||| ||||| ||||||||||||||    
T  6594110 ggtgaagtaaataaaaaaagaattacaagcacaacaaaccacagcgtgtacacatccaaatgtggggcctacgattagatcatacttgagctctgtggcg 6594011  T
Q  345 gtggaacaaa 354  Q
    ||||||||||    
T  6594010 gtggaacaaa 6594001  T

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Target: chr3; HSP #9
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 425 - 523
Target Start/End: Complemental strand, 6593979 - 6593881
Alignment:
Q  425 tggttgtgccattcatttggtcacgaatgagaatggatggcaacaaaatagcatggtttcaggtcacatgtaagtggtcaggaacgccatcggagcata 523  Q
    |||||||||||||||| |||||| |||||||| || ||||||| ||||| ||||||||||||||||||||||||||||||||||| | || ||||||||    
T  6593979 tggttgtgccattcatctggtcatgaatgagattgaatggcaaaaaaatcgcatggtttcaggtcacatgtaagtggtcaggaacacaattggagcata 6593881  T

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Target: chr3; HSP #10
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 12 - 109
Target Start/End: Complemental strand, 6725111 - 6725014
Alignment:
Q  12 gaagaatattatcagtcacaaggaatttgatttgatcatgatacaagtatcattagaaaacaccaaatttcactttgacaacaaagtggcacgacctt 109  Q
    ||||||||||||| | ||||||||| ||| |  |||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  6725111 gaagaatattatctgccacaaggaaattggtaagatcatgatacaagcatcattagaaaataccaaatttcactttgacagcaaagtggcacgacctt 6725014  T

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Target: chr3; HSP #11
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 406 - 498
Target Start/End: Original strand, 6242704 - 6242796
Alignment:
Q  406 tggtcgtgtgtgagaggagtggttgtgccattcatttggtcacgaatgagaatggatggcaacaaaatagcatggtttcaggtcacatgtaag 498  Q
    |||| ||||||||||| ||||||  |||||||| ||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||    
T  6242704 tggttgtgtgtgagagcagtggtcatgccattcgtttggtcacgaatgagaatggatcgcaacaagagagcatggtttcaggtcacatgtaag 6242796  T

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Target: chr3; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 431 - 514
Target Start/End: Original strand, 6235454 - 6235537
Alignment:
Q  431 tgccattcatttggtcacgaatgagaatggatggcaacaaaatagcatggtttcaggtcacatgtaagtggtcaggaacgccat 514  Q
    ||||||||||||||||| |||||||||||||||||||||||| || | |||||||||||||||||||| |||||| ||||||||    
T  6235454 tgccattcatttggtcatgaatgagaatggatggcaacaaaagagaacggtttcaggtcacatgtaagcggtcagaaacgccat 6235537  T

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Target: chr3; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 413 - 498
Target Start/End: Original strand, 6914478 - 6914561
Alignment:
Q  413 gtgtgagaggagtggttgtgccattcatttggtcacgaatgagaatggatggcaacaaaatagcatggtttcaggtcacatgtaag 498  Q
    |||| |||| |||||| ||||||||||| |||||||||||| |||||||||||| |  || |||||||||||||||||||||||||    
T  6914478 gtgtaagagcagtggtcgtgccattcatctggtcacgaatgggaatggatggcacc--aacagcatggtttcaggtcacatgtaag 6914561  T

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Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 390 - 491
Target Start/End: Original strand, 6256588 - 6256689
Alignment:
Q  390 aacagcggcattcttctggtcgtgtgtgagaggagtggttgtgccattcatttggtcacgaatgagaatggatggcaacaaaatagcatggtttcaggtc 489  Q
    ||||||| ||| |||||||| |||  ||||||  |||||  ||||||| || |||||| |||||| |||||||| |||||||| ||||||||||||||||    
T  6256588 aacagcgacatccttctggttgtgcatgagagcggtggtcatgccattgatctggtcatgaatgataatggatgccaacaaaagagcatggtttcaggtc 6256687  T
Q  490 ac 491  Q
    ||    
T  6256688 ac 6256689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 209 - 342
Target Start/End: Original strand, 6242542 - 6242677
Alignment:
Q  209 tacaaagtcacatgaataacaaagagaatattatctggtgaactaaatgaaaaaagaatta---caagcaccacaaactgcagcgtgtacacatccaaat 305  Q
    |||||||||||| ||||||||||||||| ||||| ||||||  |||||  ||||| |||||   || |||| ||||   |||||||  ||||||||||||    
T  6242542 tacaaagtcacaagaataacaaagagaagattatatggtgacttaaat-taaaaacaattacatcatgcacaacaagtcgcagcgtcgacacatccaaat 6242640  T
Q  306 gcagggcctaaaattagaccatacctgagctctgtgg 342  Q
    || | ||||| ||||||||||| | |||||| |||||    
T  6242641 gcggagcctacaattagaccatgcatgagctttgtgg 6242677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 176 - 209
Target Start/End: Complemental strand, 6594259 - 6594226
Alignment:
Q  176 cacagttaaaggtcatcctcgccttataattggt 209  Q
    ||||||||||||||||||||||||||||||||||    
T  6594259 cacagttaaaggtcatcctcgccttataattggt 6594226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 110
Target Start/End: Complemental strand, 6594372 - 6594325
Alignment:
Q  63 attagaaaacaccaaatttcactttgacaacaaagtggcacgaccttc 110  Q
    ||||||||  |||||||||  |||||||||||||||||||||||||||    
T  6594372 attagaaattaccaaatttatctttgacaacaaagtggcacgaccttc 6594325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 209 - 271
Target Start/End: Original strand, 6166118 - 6166179
Alignment:
Q  209 tacaaagtcacatgaataacaaagagaatattatctggtgaactaaatgaaaaaagaattaca 271  Q
    |||||||||||| ||||||||||||||| ||||| |||||||  ||||  |||||||||||||    
T  6166118 tacaaagtcacaagaataacaaagagaagattatatggtgaatgaaat-taaaaagaattaca 6166179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 393
Target Start/End: Complemental strand, 6593927 - 6593894
Alignment:
Q  360 atggtttcaggtcacatataagtggtcaggaaca 393  Q
    ||||||||||||||||| ||||||||||||||||    
T  6593927 atggtttcaggtcacatgtaagtggtcaggaaca 6593894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 6165835 - 6165920
Alignment:
Q  15 gaatattatcagtcacaaggaatttgatttgatcatgatacaagtatcattagaaaacaccaaatttcactttgacaacaaagtggca 102  Q
    ||||| || ||| |||||| |||||||||  |||||  | ||| ||| ||||||||||||||||||||||  ||| ||||||||||||    
T  6165835 gaataataacagccacaagaaatttgattaaatcattgtccaactatgattagaaaacaccaaatttcac--tgataacaaagtggca 6165920  T

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