View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_low_35 (Length: 543)
Name: NF13763_low_35
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_low_35 |
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Alignment Details
Target: chr7 (Bit Score: 351; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 23 - 373
Target Start/End: Original strand, 27669540 - 27669890
Alignment:
| Q |
23 |
tcccctccagcaaagctaagtttcaatctttgaggcaaatgggttggcttggtaagatatatagaacaattatgaaactgaggttgtggaaataatggta |
122 |
Q |
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| T |
27669540 |
tcccctccagcaaagctaagtttcaatctttgaggcaaatgggttggcttggtaagatatatagaacaattatgaaactgaggttgtggaaataatggta |
27669639 |
T |
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| Q |
123 |
atggaaatgaaagtgcatgactctgaccaaatggaggattaaatcgtagaagagccatagtttccatttgatctgtaaccaagcatacatcaaaaacaga |
222 |
Q |
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| T |
27669640 |
atggaaatgaaagtgcatgactctgaccaaatggaggattaaatcgtagaagagccatagtttccatttgatctgtaaccaagcatacatcaaaaacaga |
27669739 |
T |
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| Q |
223 |
aactttacaatcaaaccaataaatcccacatcacacattcatatataaatcataactaaccacacaacaaatcaatattcattcacaatcatgtaaaaga |
322 |
Q |
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| T |
27669740 |
aactttacaatcaaaccaataaatcccacatcacacattcatatataaatcataactaaccacacaacaaatcaatattcattcacaatcatgtaaaaga |
27669839 |
T |
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| Q |
323 |
taaaaatcaaatttttacctgattctagaacaagaagatcaacagcaaggt |
373 |
Q |
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| T |
27669840 |
taaaaatcaaatttttacctgattctagaacaagaagatcaacagcaaggt |
27669890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 417 - 533
Target Start/End: Original strand, 27669934 - 27670051
Alignment:
| Q |
417 |
ttatgaaggttatgaggagttaagagtgaaaccctaaaaaattgaatgtgtgtgatatagtagtgtagggtatagaaaatcaacatggtgttcatctatt |
516 |
Q |
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| T |
27669934 |
ttatgaaggttatgaggagttaagagtgaaaccctaaaaaattgaatgtgtgtgatatagtagtgtagggtatagaaaatcaacatggtgttcatctatt |
27670033 |
T |
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| Q |
517 |
ggtggatgc-tgatgatg |
533 |
Q |
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| T |
27670034 |
ggtggatgcatgatgatg |
27670051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 40 - 218
Target Start/End: Original strand, 27654335 - 27654519
Alignment:
| Q |
40 |
aagtttcaatctttgaggcaaatgggttg---gcttggtaagatatatagaacaa---ttatgaaactgaggttgtggaaataatggtaatggaaatgaa |
133 |
Q |
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| T |
27654335 |
aagtttcaatctttgaggcaaatggggtgatgggttggtgagatatatagaagtacggttatgtaactgtgcaggtggtgataatggtgatggaaatgaa |
27654434 |
T |
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| Q |
134 |
agtgcatgactctgaccaaatggaggattaaatcgtagaagagccatagtttccatttgatctgtaaccaagcatacatcaaaaa |
218 |
Q |
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| T |
27654435 |
agtgcacggctttgaccagatgaaggtgtaaaacgcagaagagccatagttgacatttgatctgtggcaaagcaaacatcaaaaa |
27654519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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