View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_low_38 (Length: 536)
Name: NF13763_low_38
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 1 - 520
Target Start/End: Complemental strand, 28021327 - 28020807
Alignment:
| Q |
1 |
aggtttgtaactgataagaaactagattcggaattgcatgttgcgcgagcgaacatataattttaaaattttcattaaaatttataataggaaaatgcta |
100 |
Q |
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| T |
28021327 |
aggtttgtaactgataagaaactagattcagaattgcatgttgcgcgagcgaacgtataattttaaaattttcattaaaatttataataggaaaatgcta |
28021228 |
T |
|
| Q |
101 |
gttttagcgaaaacaagcttcccgaaaatttcacgacccttataaaacaactccttgaattgtggtaactgacaagtataataaatggagccgnnnnnnn |
200 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28021227 |
gttttagcgaaaacaagcttctcgaaaatttcacgacccttataaaacaactccttgaattgtggtaactgacaagtataataaatggagccgttttctt |
28021128 |
T |
|
| Q |
201 |
-gttataaatgacctcaaatgatgtggactggattgtagagtgaaggtttgtaatttgtattatactaagtgtgcagtttttcaagcacataccacagag |
299 |
Q |
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| T |
28021127 |
tgttataaatgacctcaaatgatgtggactggattgtagagtgaaggtttgtaatttgtattatactaagtgtgcagtttttcaagcacataccacagag |
28021028 |
T |
|
| Q |
300 |
gtaagttttcaagcctttgttagcagtcttagtttgtccattggactgacggtggtaagttgtcgttttgatgaggggcaccccttgaaggttgaagaat |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28021027 |
gtaagttttcaagcctttgttagcagtcttagtttgtccattggactgacggtggtaagttgtcgttttgatgaggggcaccccttgaaggttgaagaat |
28020928 |
T |
|
| Q |
400 |
tcagtccgaaattggctcaaaataatagggtatctatcacttgtaatggaacccgacataccatgcaacttgaacatgttgtctaaagaaaaagtgcccc |
499 |
Q |
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| T |
28020927 |
tcagtccgaaattggctcaaaataatagggtatctatcacttgtaatggaacccgacataccatgcaacttgaacatgttgtctaaagaaaaagtgcccc |
28020828 |
T |
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| Q |
500 |
aaagtgaatcatggttaagag |
520 |
Q |
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| T |
28020827 |
aaagtgaatcatggttaagag |
28020807 |
T |
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Back To:
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Target: chr7 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 108 - 192
Target Start/End: Complemental strand, 29348158 - 29348075
Alignment:
| Q |
108 |
cgaaaacaagcttcccgaaaatttcacgacccttataaaacaactccttgaattgtggtaactgacaagtataataaatggagcc |
192 |
Q |
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|||||||||||||||||| | ||| |||||| |||||||||||| ||||||||||||||||||| ||| |||||||||||||||| |
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| T |
29348158 |
cgaaaacaagcttcccgagatttttacgacctttataaaacaac-ccttgaattgtggtaactgccaattataataaatggagcc |
29348075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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