View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13763_low_4 (Length: 814)

Name: NF13763_low_4
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13763_low_4
NF13763_low_4
[»] chr4 (1 HSPs)
chr4 (10-799)||(40447877-40448665)


Alignment Details
Target: chr4 (Bit Score: 718; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 718; E-Value: 0
Query Start/End: Original strand, 10 - 799
Target Start/End: Complemental strand, 40448665 - 40447877
Alignment:
Q  10 tccaagaatatgccgaaaaaagttgccatttcattacttcctaatgttggtgctgtttatttatat------acaggcaaacgaaataacttattctttt 103  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||| ||||||    
T  40448665 tccaaaaatatgccgaaaaaagttgccatttcattacttcctaatgttggtgctgtttatttatatttatatacaggcaaacgaaataacttaatctttt 40448566  T
Q  104 caatactagactgtgctattcagctagagccaggggaggtaataaatttcattttcacttagaatgtatcaattgcatatatagtattttcttaatatca 203  Q
    ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||    
T  40448565 caagactagattgtgctattcagctagagccaggggaggtaataaatttcattttcacttagaatgtatcaattgcata----gtattttcttaatatca 40448470  T
Q  204 aatcatatgaccaatttttcatttctttcagcatcattgattcttggcttgcttgcaaataacaagcataagcatatgagttctatggaggaatcgtgga 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40448469 aatcatatgaccaatttttcatttctttcagcatcattgattcttggcttgcttgcaaataacaagcataagcatatgagttctatggaggaatcgtgga 40448370  T
Q  304 ctaattggttgtgtgatatggtaatatcatattacacaaaataaaattgtcttcaaattaacatatatagtttttgtgaattagcaaactcctttgttca 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40448369 ctaattggttgtgtgatatggtaatatcatattacacaaaataaaattgtcttcaaattaacatatatagtttttgtgaattagcaaactcctttgttca 40448270  T
Q  404 actttccttatatttttccaggaaccaaatgattacagtttcatcaaccaatcaagcataaatgcagaaattgttggtagtttagagagtaacttagaga 503  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40448269 actttccttatatttttccaggaaccaaatgattacagtttcatcaaccaatcaagcataaatgcagaaattgttggtagtttagagagtaacttagaga 40448170  T
Q  504 ggccttcaaaattactcaaaactactactactacttgtagttcaagctatatgaaaacagaacatctctcacaaaaaacagcttcatatgttttttcgtt 603  Q
    ||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40448169 ggccttcaaaattactcaaaactactac---tacttgtagttcaagctatatgaaaacagaacatctctcacaaaaaacagcttcatatgttttttcgtt 40448073  T
Q  604 tgaaaacgagaatccaccaccaagaaaagttgaaccagccttgaagccaaaaaccaaagttgtgaactcaaagaatggaccacgacgtgtaaagaatcat 703  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||    
T  40448072 tgaaaacgagaatccaccaccaagaaaagttgaaccagccttgaagccaaaaaccaaagttgtgaactcaaagaatggtccacgacgtgtaaagaataat 40447973  T
Q  704 gagagcaacaagaagaacggttcattttctaaatctacaacaactcatcacacaccagatcatataattgctgagagaataaggagggaaaagatt 799  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40447972 gagagcaacaagaagaacggttcattttctaaatctacaacaactcatcacacaccagatcatataattgctgagagaataaggagggaaaagatt 40447877  T

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