View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13763_low_41 (Length: 523)
Name: NF13763_low_41
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 500; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 1 - 504
Target Start/End: Original strand, 4027403 - 4027906
Alignment:
| Q |
1 |
aagttgttaaaactcataaaagcttattagtcatagtccctctgacctacacatgagaaatttttcaagtcccaattcttgacattaaggaccaaaatga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4027403 |
aagttgttaaaactcataaaagcttattagtcatagtccctctgacctacacatgagaaatttttcaagtcccaattcttgacattaaggaccaaaatga |
4027502 |
T |
|
| Q |
101 |
tagtttgctctaatatctgcaaattaacatttagttctattatacaatgatttctacataagtgtgcaggacatagaatataaggaaggtcacaaaaagg |
200 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4027503 |
tagtttgctctaatatctgcaaattaatatttagttctattatacaatgatttctacataagtgtgcaggacatagaatataaggaaggtcacaaaaagg |
4027602 |
T |
|
| Q |
201 |
ttttggtcttacttcacagctcatacaatatctacaaatatagagctaagaagtaaaaaaccatgattacatactgtttcattgaaaaatcttaaagttt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4027603 |
ttttggtcttacttcacagctcatacaatatctacaaatatagagctaagaagtaaaaaaccatgattacatactgtttcattgaaaaatcttaaagttt |
4027702 |
T |
|
| Q |
301 |
caggatcaattcgtaacacaaattcgaatttaataagcagacattacagcataaattatttgagaagctctggaaaacaaatacgccattgaattggaac |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4027703 |
caggatcaattcgtaacacaaattcgaatttaataagcagacattacagcataaattatttgagaagctctggaaaacaaatacgccattgaattggaac |
4027802 |
T |
|
| Q |
401 |
aaatgcactctgaacgatctttcttcgtctctaggacctcgaaaattacaataagggaaacacaagaatattaccggaacgaaagagaaaagaaatgaaa |
500 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4027803 |
aaatgcactctgaacgatctttcttcgtctctaggacctcgaaaattacaataagggaaacacaagaatattaccggaacgaaagagaaaagaaatgaaa |
4027902 |
T |
|
| Q |
501 |
tgaa |
504 |
Q |
| |
|
|||| |
|
|
| T |
4027903 |
tgaa |
4027906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 318 - 495
Target Start/End: Original strand, 4013500 - 4013674
Alignment:
| Q |
318 |
acaaattcgaatttaataagcagacattacagcataaattatttgagaagctctggaaaacaaatacgccattgaattggaacaaatgcactctgaacga |
417 |
Q |
| |
|
||||||||||| | |||||||||| ||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||| | ||| | |||| | |
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| T |
4013500 |
acaaattcgaaatcaataagcagagattacagcatatattatttgagaagctccggaagacaaatacgccattgaattggaacaatttcacacggaacaa |
4013599 |
T |
|
| Q |
418 |
tctttcttcgtctctaggacctcgaaaattacaataagggaaacacaagaatattaccggaacgaaagagaaaagaaa |
495 |
Q |
| |
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||||||||||||||||| |||| ||| || |||||||||||||||||||| || ||||||| ||||||||||||||| |
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|
| T |
4013600 |
tctttcttcgtctctagaaccttgaacatcacaataagggaaacacaagatta-taccgga--gaaagagaaaagaaa |
4013674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 1 - 500
Target Start/End: Complemental strand, 3951473 - 3950976
Alignment:
| Q |
1 |
aagttgttaaaactcataaaagcttattagtcatagtccctctgacctacacatgaga--aatttttcaagtcccaattcttgacattaaggaccaaaat |
98 |
Q |
| |
|
|||||||||||||||||||||| ||| | || | | |||||| || |||||| || || || |||||||||||||||||||||| ||||||| |||||| |
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|
| T |
3951473 |
aagttgttaaaactcataaaagtttactggttaaaatccctccgagctacacgtgtgacgaagttttcaagtcccaattcttgactttaaggaacaaaat |
3951374 |
T |
|
| Q |
99 |
gatagtttgctctaatatctgca-aattaacatttagttctattatacaatgatttctacat--aagtgtgcaggacatagaatata---aggaaggtca |
192 |
Q |
| |
|
| ||||| ||||||| |||||| | | || |||||| |||||||||| | ||||| ||| ||||||||||||||| ||||| | |||||||| |
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|
| T |
3951373 |
g--agtttactctaatttctgcagagtaaatttttagtattattatacaacggtttctgcataaaagtgtgcaggacattatatatatggaagaaggtca |
3951276 |
T |
|
| Q |
193 |
caaaaaggttttggtcttacttcacagctcatacaatatctacaaatatagagctaagaagtaaaaaaccatgattacatactgtttcattgaaaaatct |
292 |
Q |
| |
|
|||||| ||||| ||||||||| | ||||| |||||||||||||||||||| || ||||| || |||||||||||| || |||| ||||| |
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|
| T |
3951275 |
caaaaaagtttttgtcttactttaaagctctaacaatatctacaaatatagaact--------gaaaactataattacatactgtctcgttgataaatcg |
3951184 |
T |
|
| Q |
293 |
taaagtttcaggatcaattcgtaa-cacaaattcgaatttaataagcaga--cattacagcataaattatttgagaagctctggaaaacaaatacgccat |
389 |
Q |
| |
|
||| |||||| || ||||| ||| |||||||| ||| || ||||||||| |||||||||| ||| ||||||| |||| ||| |||||| ||||| |
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|
| T |
3951183 |
aaaattttcagcattaattcataaccacaaatttgaaattgataagcagagtatttacagcatatattgtttgagaggctccagaaggcaaatatgccat |
3951084 |
T |
|
| Q |
390 |
tgaattggaacaaatgcactctgaacgatctttcttcgtctctaggacctcgaaaattacaataagggaaacacaagaatattaccggaacgaaagagaa |
489 |
Q |
| |
|
|| |||||||||| |||||| |||| |||||||| |||||||| |||| ||| | ||||||||||||||||||| ||||| |||||||||| |||| |
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|
| T |
3951083 |
tggattggaacaagtgcactacgaacaatctttct--gtctctagaaccttgaacgtcacaataagggaaacacaaggttattaacggaacgaaacagaa |
3950986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 281 - 500
Target Start/End: Original strand, 4005213 - 4005436
Alignment:
| Q |
281 |
attgaaaaatcttaaagtttc--aggatcaattcgtaacacaaattcgaatttaataagcagac--attacagcataaattatttgagaagctctggaaa |
376 |
Q |
| |
|
||||| ||||||||||||||| || || ||||| ||||||||||||||||||||||| |||| ||||||||||| |||| |||||||| || ||| |
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|
| T |
4005213 |
attgataaatcttaaagtttctcagcattaattcataacacaaattcgaatttaataaacagagcaattacagcatatattagttgagaagttccagaag |
4005312 |
T |
|
| Q |
377 |
acaaatacgccattgaattggaacaaatgcactctgaacgatctttcttcgtctctaggacctcgaaaattacaataagggaaacacaagaatattaccg |
476 |
Q |
| |
|
| ||||| ||||||||| |||||||| |||||||||||| |||||||||||||||||| |||| ||| | |||||||||||||||||| ||||| | |
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|
| T |
4005313 |
ataaatatgccattgaactggaacaagtgcactctgaacaatctttcttcgtctctagaaccttgaataacgcaataagggaaacacaaggttattatca |
4005412 |
T |
|
| Q |
477 |
gaacgaaagagaaaagaaatgaaa |
500 |
Q |
| |
|
||| |||| |||||||||||||| |
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|
| T |
4005413 |
gaaagaaatcgaaaagaaatgaaa |
4005436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 280 - 466
Target Start/End: Original strand, 3991155 - 3991341
Alignment:
| Q |
280 |
cattgaaaaatcttaaagtttcaggatcaattcgtaacacaaattcgaatttaataagcagacattacagcataaattatttgagaagctctggaaaaca |
379 |
Q |
| |
|
|||||| |||||||||||||| || || |||| ||||| |||||| || | |||||||||| ||||||||||| |||||| ||||||| |||| ||| |
|
|
| T |
3991155 |
cattgataaatcttaaagttttagcattaatttgtaacggaaattcaaaatcaataagcagagattacagcatatattattgatgaagctccggaagaca |
3991254 |
T |
|
| Q |
380 |
aatacgccattgaattggaacaaatgcactctgaacgatctttcttcgtctctaggacctcgaaaattacaataagggaaacacaag |
466 |
Q |
| |
|
||| ||||||||||||||||||| | |||||||||| |||||||||||||| ||| |||| ||| || |||||||||||||||||| |
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|
| T |
3991255 |
aatgcgccattgaattggaacaacttcactctgaacaatctttcttcgtctgtagaaccttgaatatatcaataagggaaacacaag |
3991341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 185 - 244
Target Start/End: Original strand, 4013305 - 4013364
Alignment:
| Q |
185 |
gaaggtcacaaaaaggttttggtcttacttcacagctcatacaatatctacaaatataga |
244 |
Q |
| |
|
|||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4013305 |
gaaggtaacaaaaatgttttggtcttactctacagctcatacaatatctacaaatataga |
4013364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 7 - 79
Target Start/End: Original strand, 4013110 - 4013184
Alignment:
| Q |
7 |
ttaaaactcataaaagcttattagtcatagtccctctgacctacaca--tgagaaatttttcaagtcccaattct |
79 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||| | ||||||| |||| | ||||||||||||||||||| |
|
|
| T |
4013110 |
ttaaaactcataaaagcttattagtcataatctctcaaagctacacatgtgagcattttttcaagtcccaattct |
4013184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 137 - 228
Target Start/End: Original strand, 3990563 - 3990654
Alignment:
| Q |
137 |
ctattatacaatgatttc-tacataa--gtgtgcaggacatagaatataaggaaggtcacaaaaaggttttggtcttacttcacagctcatacaa |
228 |
Q |
| |
|
|||||||||||||||||| | ||||| ||||||| |||| ||||||||| || ||||||||| ||||||||||| ||||| ||||||||||| |
|
|
| T |
3990563 |
ctattatacaatgatttcctgcataaaagtgtgcaagacagagaatataa---agttcacaaaaaagttttggtctttcttcaaagctcatacaa |
3990654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 344 - 476
Target Start/End: Original strand, 13400464 - 13400594
Alignment:
| Q |
344 |
ttacagcataaattatttgagaagctctggaaaacaaatacgccattgaattggaacaaatgcactctgaacgatctttcttcgtctctaggacctcgaa |
443 |
Q |
| |
|
|||||||||| ||| || |||| |||| ||| | ||||| ||||||| |||||||||| || || ||||| ||||||||| ||||| || |||| ||| |
|
|
| T |
13400464 |
ttacagcatatattgttggagaggctccagaagaaaaatatgccattggattggaacaa--gcgctatgaacaatctttctttgtctcaagaaccttgaa |
13400561 |
T |
|
| Q |
444 |
aattacaataagggaaacacaagaatattaccg |
476 |
Q |
| |
|
|| |||||||||||||||||| |||||||| |
|
|
| T |
13400562 |
catcgcaataagggaaacacaaggttattaccg |
13400594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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