View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13763_low_43 (Length: 520)

Name: NF13763_low_43
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13763_low_43
NF13763_low_43
[»] chr4 (3 HSPs)
chr4 (23-516)||(18962592-18963085)
chr4 (414-516)||(18968934-18969036)
chr4 (28-129)||(18967890-18967991)


Alignment Details
Target: chr4 (Bit Score: 445; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 23 - 516
Target Start/End: Original strand, 18962592 - 18963085
Alignment:
Q  23 agatactgttgtatgtcgtggaggtagtgtcattttatctccatcagggactgttttggctggaccaaattatgatggggaagcattgatatcagcagac 122  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18962592 agatactgttgtatgtcgcggaggtagtgtcattttatctccatcagggactgttttggctggaccaaattatgatggggaagcattgatatcagcagac 18962691  T
Q  123 ctaggtacttcattcctcgctaacgagtatttctggacattctttaaattggagtattatattattaatatttggttctcttgaagcattttttatttaa 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  18962692 ctaggtacttcattcctcgctaacgagtatttctggacattctttaaattggagtattatattattaatatttggttctcttaaagcatttttgatttaa 18962791  T
Q  223 gagaaccaattttaagctcaaataatgctagcagttgtatttttaggttgaatttgaatcaaatgcatcttttgcaatttcttaatacatgttaaaacac 322  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  18962792 gagaaccaattttaagctcaaacaatgctagcagttgtatttttaggttgaatttgaatcaaatgcatcttttgcaattttttaatacatgttaaaacac 18962891  T
Q  323 ttttaattttctataattatatactcaaaagtaattttgaactaaagcatagcttctaattatgctacaccctaattggtgaaannnnnnngcacagata 422  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||       |||||||||    
T  18962892 ttttaattttctataattatatactcaaaagtaattttgaactaaagcatagcttctaattatgctacaccctaattgttgaaatttttttgcacagata 18962991  T
Q  423 ttggggaaatagcaagagcttagtttgattttgatgtggttggacactatgcaagacctgaagtgctaagcttgattgtcaatgaccaaccaac 516  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18962992 ttggggaaatagcaagagctaagtttgattttgatgtggttggacactatgcaagacctgaagtgctaagcttgattgtcaatgaccaaccaac 18963085  T

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Target: chr4; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 414 - 516
Target Start/End: Original strand, 18968934 - 18969036
Alignment:
Q  414 gcacagatattggggaaatagcaagagcttagtttgattttgatgtggttggacactatgcaagacctgaagtgctaagcttgattgtcaatgaccaacc 513  Q
    |||||||| |||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||    
T  18968934 gcacagatcttggtgaaatagcaagagcgaagtttgattttgatgtggttggacactatgcaagacctgaagtgctaagcttgattgtcaaggaccatcc 18969033  T
Q  514 aac 516  Q
    |||    
T  18969034 aac 18969036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 28 - 129
Target Start/End: Original strand, 18967890 - 18967991
Alignment:
Q  28 ctgttgtatgtcgtggaggtagtgtcattttatctccatcagggactgttttggctggaccaaattatgatggggaagcattgatatcagcagacctagg 127  Q
    |||||||||||  |||||||||||||||| |||| ||||||||| |||||||||||||||| |||||||| ||||| ||| | |||||||||||||||||    
T  18967890 ctgttgtatgtgctggaggtagtgtcattatatcgccatcaggggctgttttggctggacccaattatgagggggaggcactaatatcagcagacctagg 18967989  T
Q  128 ta 129  Q
    ||    
T  18967990 ta 18967991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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