View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13763_low_45 (Length: 517)

Name: NF13763_low_45
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13763_low_45
NF13763_low_45
[»] chr7 (2 HSPs)
chr7 (4-492)||(32086757-32087241)
chr7 (445-489)||(7262301-7262345)
[»] chr4 (2 HSPs)
chr4 (424-488)||(41085085-41085149)
chr4 (440-494)||(21347166-21347220)
[»] chr8 (4 HSPs)
chr8 (427-485)||(11956133-11956191)
chr8 (440-477)||(39317099-39317136)
chr8 (445-489)||(589089-589133)
chr8 (445-489)||(624789-624833)
[»] chr5 (3 HSPs)
chr5 (424-493)||(2525214-2525283)
chr5 (425-489)||(2499251-2499315)
chr5 (425-489)||(19145484-19145548)
[»] scaffold0209 (1 HSPs)
scaffold0209 (445-489)||(30226-30270)
[»] chr1 (1 HSPs)
chr1 (445-489)||(2783069-2783113)


Alignment Details
Target: chr7 (Bit Score: 438; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 4 - 492
Target Start/End: Original strand, 32086757 - 32087241
Alignment:
Q  4 gatggacatcatcattttttaaaaacgaaattgtattatttgtataataatgctgccctatttgattggtgtaggggtgagttggatccacaatgcagtt 103  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32086757 gatgcacatcatcattttttaaaaacgaaattgtattatttgtataataatgctgccctatttgattggtgtaggggtgagttggatccacaatgcagtt 32086856  T
Q  104 ataattgctgaggatttgagtcatggacgtgttggcgatttggtgaagaaaa-tctgaatgatacgtacataacaccaaaaattattggatagcagcaac 202  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  32086857 ataattgctgaggatttgggtcatggacgtgttggcaatttggtgaagaaaaatctgaatgatacgtacataacaccaaaaattattggatagcagcaac 32086956  T
Q  203 tactcctttgttgtttttgtgctgtcaattacttgtttggttggatgtgaaacaggacataaaataatttcgtattgggcaaaggctcaattctacaatg 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||    
T  32086957 tactcctttgttgtttttgtgctgtcaattacttgtttggttggatgtgaaaca-----taaaataatttcgtattgggcaaaggctcaattctacaatg 32087051  T
Q  303 atcctggtgcaacttgatcggcggatcatcatatatacacgcctaaaatctcagtggataatggttcagatagttaatttagtctaatctggatctcata 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||    
T  32087052 atcctggtgcaacttgatcggcggatcatcatatatacacgcctaaaatttcagtggataatggttcagataattaatttagtctaatctggatcttata 32087151  T
Q  403 ttgtgaataaaggtctcatgttgttcgattttctctggtgttaatttcgatggacaagttcatatagagctttgctctagctttaaacag 492  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32087152 ttgtgaataaaggtctcatgttgttcgattttctctggtgttaatttcgatggacaagttcatatagagctttgctctagctttaaacag 32087241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 445 - 489
Target Start/End: Original strand, 7262301 - 7262345
Alignment:
Q  445 aatttcgatggacaagttcatatagagctttgctctagctttaaa 489  Q
    ||||||||||||||| | ||||||||||||| |||| ||||||||    
T  7262301 aatttcgatggacaaatccatatagagctttactctggctttaaa 7262345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 424 - 488
Target Start/End: Original strand, 41085085 - 41085149
Alignment:
Q  424 tgttcgattttctctggtgttaatttcgatggacaagttcatatagagctttgctctagctttaa 488  Q
    ||||||||| |||||| ||   |||||||||||||||| ||||||||||||||||||||||||||    
T  41085085 tgttcgattctctctgatgccgatttcgatggacaagtccatatagagctttgctctagctttaa 41085149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 440 - 494
Target Start/End: Complemental strand, 21347220 - 21347166
Alignment:
Q  440 gtgttaatttcgatggacaagttcatatagagctttgctctagctttaaacaggg 494  Q
    |||||||||||||||    ||||||||||||||||||||||| ||||||| ||||    
T  21347220 gtgttaatttcgatgagttagttcatatagagctttgctctaactttaaataggg 21347166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 427 - 485
Target Start/End: Complemental strand, 11956191 - 11956133
Alignment:
Q  427 tcgattttctctggtgttaatttcgatggacaagttcatatagagctttgctctagctt 485  Q
    ||||||||||||||||| ||||||| |||||||||  | | ||||||||||||||||||    
T  11956191 tcgattttctctggtgtcaatttcggtggacaagtctacacagagctttgctctagctt 11956133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 477
Target Start/End: Original strand, 39317099 - 39317136
Alignment:
Q  440 gtgttaatttcgatggacaagttcatatagagctttgc 477  Q
    |||||||||||| |||||||||||||||||| ||||||    
T  39317099 gtgttaatttcgttggacaagttcatatagaactttgc 39317136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 445 - 489
Target Start/End: Complemental strand, 589133 - 589089
Alignment:
Q  445 aatttcgatggacaagttcatatagagctttgctctagctttaaa 489  Q
    |||||| |||||||||| |||||||||||||||||| ||| ||||    
T  589133 aatttcaatggacaagtccatatagagctttgctctggctataaa 589089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 445 - 489
Target Start/End: Original strand, 624789 - 624833
Alignment:
Q  445 aatttcgatggacaagttcatatagagctttgctctagctttaaa 489  Q
    |||||| |||||||||| |||||||||||||||||| ||| ||||    
T  624789 aatttcaatggacaagtccatatagagctttgctctggctataaa 624833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 493
Target Start/End: Complemental strand, 2525283 - 2525214
Alignment:
Q  424 tgttcgattttctctggtgttaatttcgatggacaagttcatatagagctttgctctagctttaaacagg 493  Q
    |||||||||||||  ||||||||||| ||||||| |||||||||| | ||||| | |  |||||||||||    
T  2525283 tgttcgattttcttcggtgttaattttgatggactagttcatatataactttgttttgactttaaacagg 2525214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 425 - 489
Target Start/End: Complemental strand, 2499315 - 2499251
Alignment:
Q  425 gttcgattttctctggtgttaatttcgatggacaagttcatatagagctttgctctagctttaaa 489  Q
    |||||||| || ||| ||| ||||||||||| ||||| |||||||||| || |||| ||||||||    
T  2499315 gttcgattctccctgttgtcaatttcgatgggcaagtccatatagagccttactctggctttaaa 2499251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 425 - 489
Target Start/End: Complemental strand, 19145548 - 19145484
Alignment:
Q  425 gttcgattttctctggtgttaatttcgatggacaagttcatatagagctttgctctagctttaaa 489  Q
    ||||||||  ||||||||  ||||||| ||| ||||| |||| ||||||||||||| ||||||||    
T  19145548 gttcgattccctctggtgccaatttcggtgggcaagtccatacagagctttgctctggctttaaa 19145484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 445 - 489
Target Start/End: Original strand, 30226 - 30270
Alignment:
Q  445 aatttcgatggacaagttcatatagagctttgctctagctttaaa 489  Q
    |||||| |||||||||| |||||||||||||||||| ||| ||||    
T  30226 aatttcaatggacaagtccatatagagctttgctctggctataaa 30270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 445 - 489
Target Start/End: Original strand, 2783069 - 2783113
Alignment:
Q  445 aatttcgatggacaagttcatatagagctttgctctagctttaaa 489  Q
    ||||||| ||||||||| |||||||||||||||||| | ||||||    
T  2783069 aatttcggtggacaagtccatatagagctttgctctggttttaaa 2783113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University