View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13763_low_46 (Length: 517)

Name: NF13763_low_46
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13763_low_46
NF13763_low_46
[»] chr7 (14 HSPs)
chr7 (5-501)||(20141381-20141876)
chr7 (16-501)||(20133880-20134361)
chr7 (120-481)||(20338053-20338411)
chr7 (163-490)||(20126712-20127039)
chr7 (205-434)||(20375133-20375362)
chr7 (201-418)||(20351302-20351519)
chr7 (202-409)||(20361858-20362068)
chr7 (201-302)||(20360381-20360482)
chr7 (190-272)||(20407441-20407523)
chr7 (362-484)||(22063001-22063123)
chr7 (216-334)||(20139113-20139235)
chr7 (207-272)||(20442134-20442199)
chr7 (201-272)||(20423081-20423152)
chr7 (362-409)||(22069470-22069517)
[»] chr1 (2 HSPs)
chr1 (362-484)||(15960578-15960700)
chr1 (259-311)||(15960475-15960527)
[»] chr4 (1 HSPs)
chr4 (427-484)||(11971589-11971646)


Alignment Details
Target: chr7 (Bit Score: 416; Significance: 0; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 5 - 501
Target Start/End: Complemental strand, 20141876 - 20141381
Alignment:
Q  5 gactgagatgaatgctaagaagtgtaccttggtttttatgtgtatta-caacgttcaacatttctactctacaattctccaaaggcgcaacaccacattt 103  Q
    |||||| || ||||||||||||||| ||||| ||||||||||||||| || ||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  20141876 gactgaaataaatgctaagaagtgtcccttgatttttatgtgtattatcagcgttcaacatttctactctccaattctccaaaggtgcaacaccacattt 20141777  T
Q  104 gtaacnnnnnnntccaatcatgaatcacctatcaccatcacggcgtcctaccatcatgccaccaaaattcatccctaacgagcaaatcaccgatgtgctt 203  Q
    |||||       ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20141776 gtaacaaaaa--tcccatcatgaatcacctatcaccatcacggcgtcctaccatcatgccaccaaaattcatccctaacgagcaaatcaccgatgtgctt 20141679  T
Q  204 tccttgcttcctgtcaaatctctccttcgatttaggtgcttgagtaagtcacttgactctctcatctctgatcccaacttcatcaaattgcaccttactc 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  20141678 tccttgcttcctgtcaaatctctccttcgatttaggtgcttgagtaagtcacttgactctctcatctctaatcccaacttcatcaaattgcaccttactc 20141579  T
Q  304 gatattcaaggaatgcggacttcacacttgtatccacctctcatctcaatgttatattcttcactgtttttcgtttgctccacaaccctccaatcattat 403  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20141578 gatcttcaaggaatgcggacttcacacttgtatccacctctcatctcaatgttatattcttcactgtttttcgtttgctccacaaccctccaatcattat 20141479  T
Q  404 caatctaccagaagagcctaaccatcaacttacagacaagggctgtctctttgttgttggttcctgcaatggattactttgtttgttcagtcagtttt 501  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20141478 caatctaccagaagatcctaaccatcaacttgcagacaagggctgtctctttgttgttggttcctgcaatggattactttgtttgttcagtcagtttt 20141381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 16 - 501
Target Start/End: Complemental strand, 20134361 - 20133880
Alignment:
Q  16 atgctaagaagtgtaccttggtttttatgtgtattacaacgttcaacatttctactctacaattctccaaaggcgcaacaccacatttgtaacnnnnnnn 115  Q
    |||||||||||||| |||| |||||| |||||  | ||  |||||| ||||| ||||| || ||||||||||| | || |||||| || ||||           
T  20134361 atgctaagaagtgtcccttagtttttgtgtgttat-cagtgttcaaaatttccactcttcatttctccaaaggtgtaaaaccacacttctaacaaaaa-- 20134265  T
Q  116 tccaatcatgaatcacctatcaccatcacggcgtcctaccatcatgccaccaaaattcatccctaacgagcaaatcaccgatgtgctttccttgcttcct 215  Q
    ||| |||||||||| |||||| |||||||  |||||||||| |||| ||||||||||||  |||||||| || ||| || |  |||||||| | |||||     
T  20134264 tcccatcatgaatctcctatctccatcacaacgtcctaccaacatgtcaccaaaattcaatcctaacgaccacatccccaacttgctttccctccttccc 20134165  T
Q  216 gtcaaatctctccttcgatttaggtgcttgagtaagtcacttgactctctcatctctgatcccaacttcatcaaattgcaccttactcgatattcaagga 315  Q
    ||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||| | ||||||||||| |||||||||||||| | || |||    
T  20134164 gtcaaatctcttcttcgatttaggtgcttgagtaagccacatgactctctcatctctgatccgaccttcatcaaatggcaccttactcgatctgcatgga 20134065  T
Q  316 atgcggacttcacacttgtatccacctctcatctcaatgttatattcttcactgtttttcgtttgctccacaaccctccaatcattatcaatctaccaga 415  Q
    |||| || |||||||||||||| |||||| ||| ||||||| |||||||||||||||||||||||||||| ||||||||||||| || |||||| |||||    
T  20134064 atgcagatttcacacttgtatctacctctgatcgcaatgttgtattcttcactgtttttcgtttgctccagaaccctccaatca-taccaatcttccaga 20133966  T
Q  416 agagcctaaccatcaacttacagacaagggctgtctctttgttgttggttcctgcaatggattactttgtttgttcagtcagtttt 501  Q
    ||| |||||||||||||||||  |||||| |||||  | |||||||||||| |||||||||||||| || |||||| |||| ||||    
T  20133965 agatcctaaccatcaacttacgaacaaggactgtcattatgttgttggttcatgcaatggattactctgcttgttctgtcaatttt 20133880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 120 - 481
Target Start/End: Original strand, 20338053 - 20338411
Alignment:
Q  120 atcatgaatcacctatcaccatcacggcgtcctaccatcatgccaccaaaattcatccctaacgagcaaatcaccgatgtgctttccttgcttcctgtca 219  Q
    ||||||| || |||||||||||||| |||||||||||||| | |||| |||||||| ||||||||||| ||| ||||| |||| ||||| ||||||||||    
T  20338053 atcatgagtctcctatcaccatcacagcgtcctaccatcacgtcaccgaaattcattcctaacgagcacatccccgatttgctctccttacttcctgtca 20338152  T
Q  220 aatctctccttcgatttaggtgcttgagtaagtcacttgactctctcatctctgatcccaacttcatcaaattgcaccttactcgatattcaaggaatgc 319  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||   || |     
T  20338153 aatctctccttcgatttaggtgtttgagtaagtcacatgactctctcatctctgatcccaacttcatcaaattgcaccttactcgatctgcacaaaaaga 20338252  T
Q  320 ggacttcacacttgtatccacctctcatctcaatgttatattcttcactgtttttcgtttgctccacaaccctccaatcattatcaatctaccagaagag 419  Q
    |||||||||||||||||| |||||| ||| ||||||| ||| |||||||||||||||||||||| | || ||||||||||||||| |||| ||||||||     
T  20338253 ggacttcacacttgtatctacctctgatcgcaatgttgtatccttcactgtttttcgtttgctcgagaatcctccaatcattatcgatcttccagaagat 20338352  T
Q  420 cctaaccatcaacttacagacaagggctgtctctttgttgttggttcctgcaatggattact 481  Q
    ||| ||||  ||||||||||   || | | |||| ||| |||||||||| ||||||||||||    
T  20338353 ccttaccacaaacttacaga---ggacagcctctatgtcgttggttcctacaatggattact 20338411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 163 - 490
Target Start/End: Complemental strand, 20127039 - 20126712
Alignment:
Q  163 caccaaaattcatccctaacgagcaaatcaccgatgtgctttccttgcttcctgtcaaatctctccttcgatttaggtgcttgagtaagtcacttgactc 262  Q
    ||||||||||||| ||||||||||| ||| ||||| |||| || || |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  20127039 caccaaaattcattcctaacgagcacatccccgatttgctctctttacttcttgtcaaatctctccttcgatttaggtgcttgagtaagtcacttgactc 20126940  T
Q  263 tctcatctctgatcccaacttcatcaaattgcaccttactcgatattcaaggaatgcggacttcacacttgtatccacctctcatctcaatgttatattc 362  Q
    ||||||||||||||||| ||||||||||||||| |||||||| |  |||||||| || |||||| |  ||||||| ||||||  || ||||||| ||| |    
T  20126939 tctcatctctgatcccatcttcatcaaattgcaacttactcggtcatcaaggaaggcagacttctctattgtatctacctctggtcgcaatgttctatgc 20126840  T
Q  363 ttcactgtttttcgtttgctccacaaccctccaatcattatcaatctaccagaagagcctaaccatcaacttacagacaagggctgtctctttgttgttg 462  Q
    ||||||||||||| | | ||||| ||||||||| ||||| ||||||| ||| | || ||  || |||||||| || |||||| ||| || ||||||||||    
T  20126839 ttcactgtttttcatctactccagaaccctccattcattttcaatcttccaaaggatccatactatcaacttgcaaacaaggactgcctgtttgttgttg 20126740  T
Q  463 gttcctgcaatggattactttgtttgtt 490  Q
    ||||||||||||||||||| || |||||    
T  20126739 gttcctgcaatggattactctgcttgtt 20126712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 205 - 434
Target Start/End: Complemental strand, 20375362 - 20375133
Alignment:
Q  205 ccttgcttcctgtcaaatctctccttcgatttaggtgcttgagtaagtcacttgactctctcatctctgatcccaacttcatcaaattgcaccttactcg 304  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||   ||||| |||  |||||||||||||||||||    
T  20375362 ccttgcttcccgtcaaatctctccttcgatttaggtgcttgagtaagtcacatgactctctcatctccagtcccacctttgtcaaattgcaccttactcg 20375263  T
Q  305 atattcaaggaatgcggacttcacacttgtatccacctctcatctcaatgttatattcttcactgtttttcgtttgctccacaaccctccaatcattatc 404  Q
    || | || | |||  |||||| || |||||||| || ||| ||  ||||||  |||  |||||  ||||||||||||  || ||||||||||||||| ||    
T  20375262 atctgcacgtaatatggacttgactcttgtatctacttctgatgacaatgtcctatctttcacaatttttcgtttgcatcaaaaccctccaatcattttc 20375163  T
Q  405 aatctaccagaagagcctaaccatcaactt 434  Q
    ||||| |||||||| ||| || ||||||||    
T  20375162 aatcttccagaagatccttactatcaactt 20375133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 201 - 418
Target Start/End: Original strand, 20351302 - 20351519
Alignment:
Q  201 ctttccttgcttcctgtcaaatctctccttcgatttaggtgcttgagtaagtcacttgactctctcatctctgatcccaacttcatcaaattgcacctta 300  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||  | |||||||||||||||   ||||| |||  |||||||||||||||    
T  20351302 ctttccttgcttcccgtcaaatctctccttcgatttaggtgcttgagtaagttgcatgactctctcatctccagtcccacctttgtcaaattgcacctta 20351401  T
Q  301 ctcgatattcaaggaatgcggacttcacacttgtatccacctctcatctcaatgttatattcttcactgtttttcgtttgctccacaaccctccaatcat 400  Q
    |||||| | || | ||||| ||||| ||||||||||| |||||  ||  ||||||  ||  |||||| |||||||||||||| ||  | ||||||| |||    
T  20351402 ctcgatctgcacgtaatgcagactttacacttgtatctacctccgatgacaatgtcctaaccttcacagtttttcgtttgctacaagatcctccaagcat 20351501  T
Q  401 tatcaatctaccagaaga 418  Q
    | ||||||| ||||||||    
T  20351502 tttcaatcttccagaaga 20351519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 202 - 409
Target Start/End: Complemental strand, 20362068 - 20361858
Alignment:
Q  202 tttccttgcttcctgtcaaatctctccttcgatttaggtgcttgagtaagtcacttgactctctcatctctgatcc--caacttcatcaaattgcacctt 299  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||  || |  || |||  || |||||||||||    
T  20362068 tttccttgcttcccgtcaaatccctccttcgatttaggtgcttgagtaagtcacatgactctctcatctccaatacaacacctttgtccaattgcacctt 20361969  T
Q  300 actcgatattcaaggaatgcggacttcacacttgtatccacctctcatctcaatgttatattcttcactg-tttttcgtttgctccacaaccctccaatc 398  Q
    ||||||| | || | ||||  ||||| ||||||||||| |||||  ||  ||||||  ||| |||||| | |||||| |||||| || |||||||||||     
T  20361968 actcgatctgcacgtaatgtagacttgacacttgtatctacctccgataacaatgtcctatccttcacagttttttcctttgctacaaaaccctccaata 20361869  T
Q  399 attatcaatct 409  Q
    ||| |||||||    
T  20361868 attttcaatct 20361858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 201 - 302
Target Start/End: Original strand, 20360381 - 20360482
Alignment:
Q  201 ctttccttgcttcctgtcaaatctctccttcgatttaggtgcttgagtaagtcacttgactctctcatctctgatcccaacttcatcaaattgcacctta 300  Q
    |||||||||||| | ||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||  ||| || |||  |||||||||||||||    
T  20360381 ctttccttgcttgccgtcaaatttctacttcgatttaggtgcttgagtaagtcacatgactctctcatctccaatctcacctttgtcaaattgcacctta 20360480  T
Q  301 ct 302  Q
    ||    
T  20360481 ct 20360482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 190 - 272
Target Start/End: Original strand, 20407441 - 20407523
Alignment:
Q  190 tcaccgatgtgctttccttgcttcctgtcaaatctctccttcgatttaggtgcttgagtaagtcacttgactctctcatctct 272  Q
    |||||||| | ||||| || ||||| |||||||| |||||||||||||||||||| |||||||||  ||||||||||||||||    
T  20407441 tcaccgatattctttcattacttcccgtcaaatcactccttcgatttaggtgcttaagtaagtcatatgactctctcatctct 20407523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 362 - 484
Target Start/End: Original strand, 22063001 - 22063123
Alignment:
Q  362 cttcactgtttttcgtttgctccacaaccctccaatcattatcaatctaccagaagagcctaaccatcaacttacagacaagggctgtctctttgttgtt 461  Q
    |||||| ||||| ||||||||| | ||||||||||||||||||||||| ||| || | ||| |||||||||| |  |||||||  || | ||   | |||    
T  22063001 cttcacagttttccgtttgctcgagaaccctccaatcattatcaatcttccaaaaaatccttaccatcaactgaatgacaaggattgccactacatcgtt 22063100  T
Q  462 ggttcctgcaatggattactttg 484  Q
    ||||||||||||||||| |||||    
T  22063101 ggttcctgcaatggattgctttg 22063123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 216 - 334
Target Start/End: Complemental strand, 20139235 - 20139113
Alignment:
Q  216 gtcaaatctctccttcgatttaggtgcttgagtaagtcac----ttgactctctcatctctgatcccaacttcatcaaattgcaccttactcgatattca 311  Q
    ||||||||||||||| ||||||||||||||||||||||||    ||  |||   ||| ||| |||||||||||  ||||||| |||||||||||| | |     
T  20139235 gtcaaatctctcctttgatttaggtgcttgagtaagtcacatagttttctcatgcatatctcatcccaacttcgacaaattgtaccttactcgatctgct 20139136  T
Q  312 aggaatgcggacttcacacttgt 334  Q
      |||||| ||||||||||||||    
T  20139135 tagaatgcagacttcacacttgt 20139113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 207 - 272
Target Start/End: Original strand, 20442134 - 20442199
Alignment:
Q  207 ttgcttcctgtcaaatctctccttcgatttaggtgcttgagtaagtcacttgactctctcatctct 272  Q
    |||||||| |||||||| ||| || ||||||||||||| |||||||||  ||||||||||||||||    
T  20442134 ttgcttcccgtcaaatcactcatttgatttaggtgcttaagtaagtcatatgactctctcatctct 20442199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 201 - 272
Target Start/End: Original strand, 20423081 - 20423152
Alignment:
Q  201 ctttccttgcttcctgtcaaatctctccttcgatttaggtgcttgagtaagtcacttgactctctcatctct 272  Q
    ||||| ||||||||  |||||||  |||||||||| |||||||| |||||||||  ||||||||||||||||    
T  20423081 ctttcattgcttcccatcaaatcattccttcgattcaggtgcttaagtaagtcatatgactctctcatctct 20423152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 409
Target Start/End: Original strand, 22069470 - 22069517
Alignment:
Q  362 cttcactgtttttcgtttgctccacaaccctccaatcattatcaatct 409  Q
    |||||| ||||| ||||||||| | |||||||||||||||||||||||    
T  22069470 cttcacagttttccgtttgctcgagaaccctccaatcattatcaatct 22069517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 362 - 484
Target Start/End: Original strand, 15960578 - 15960700
Alignment:
Q  362 cttcactgtttttcgtttgctccacaaccctccaatcattatcaatctaccagaagagcctaaccatcaacttacagacaagggctgtctctttgttgtt 461  Q
    |||||| ||||||||||||||| | ||||||||||||||| | ||||| ||  |||| ||| |  ||||| ||| ||||||||  ||| ||| | |||||    
T  15960578 cttcacagtttttcgtttgctcgaaaaccctccaatcatttttaatcttcccaaagatccttattatcaatttaaagacaaggattgtgtctatattgtt 15960677  T
Q  462 ggttcctgcaatggattactttg 484  Q
    ||||| ||||||||||| |||||    
T  15960678 ggttcttgcaatggattgctttg 15960700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 259 - 311
Target Start/End: Original strand, 15960475 - 15960527
Alignment:
Q  259 actctctcatctctgatcccaacttcatcaaattgcaccttactcgatattca 311  Q
    |||| ||||| ||||||||||||||||||||||||||||||| ||||| ||||    
T  15960475 actccctcatttctgatcccaacttcatcaaattgcaccttaatcgatcttca 15960527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 484
Target Start/End: Complemental strand, 11971646 - 11971589
Alignment:
Q  427 atcaacttacagacaagggctgtctctttgttgttggttcctgcaatggattactttg 484  Q
    ||||||||| |||||||||||| |||  | |||||||||| ||||||||||| |||||    
T  11971646 atcaacttaaagacaagggctgcctcggtattgttggttcgtgcaatggattgctttg 11971589  T

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