View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_low_47 (Length: 512)
Name: NF13763_low_47
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_low_47 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 133 - 512
Target Start/End: Original strand, 18198422 - 18198812
Alignment:
| Q |
133 |
ttaaaacctagaacagtactatgaaagaaattgagacgaatggatatgaatctc-----------aattaccatggtgatttcttgaagtgaaagttgga |
221 |
Q |
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| T |
18198422 |
ttaaaatctaaaacagtactatcaaagaaattgagacgaatggatatgaatctctatgaaagttcaattaccatggtgatttcttgaagtgaaagttgga |
18198521 |
T |
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| Q |
222 |
aaatcatgagtagaggatggaatagaaattgataattgagtagtagatgatttatcatccaaatcaagccattgatctctccctttatgtggccattcat |
321 |
Q |
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| T |
18198522 |
aaattatgagtagaggatggaatagaaattgataattgagtagtagatgatttatcatccaaatcaagccattgatctctccctttatgtggccattcat |
18198621 |
T |
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| Q |
322 |
caaagaagcgatgaacagttttctgaggttcatcttgctttgagtgttcactaaggctctgaagttgcaagcaagagtaatcattggacaacgctgaata |
421 |
Q |
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| T |
18198622 |
caaagaagcgatgaacagttttctgaggttcatcttgctttgagtgttcactaaggctctgaagttgcaagcaagagtaatcattggacaacgccgaata |
18198721 |
T |
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| Q |
422 |
gcttctctgtctcaaagaagtagaagatgatgaggaagaactcatagtaagtggtgttagtcgccaaggatcatgttccattgatgaagta |
512 |
Q |
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| T |
18198722 |
gctcctctgtctcaaagaagtagaagatgatgaggaagaactcatagtaagtggtgttagttgccaaggatcatgttccattgatgaagta |
18198812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 19 - 136
Target Start/End: Original strand, 18198114 - 18198230
Alignment:
| Q |
19 |
tgaaccccaccttgtagatgcattattgccctttgattcaggtacatgggacacacattattgaaaactttgttcaaccatctacaaaacaatatcaagg |
118 |
Q |
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| T |
18198114 |
tgaaccccaccttgtagatgcattattgccctttgattcaggtacatgg-acacacattattgaaaactttgctcaaccatctacaaaacaatatcaagg |
18198212 |
T |
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| Q |
119 |
ttttagacaaacaattaa |
136 |
Q |
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| T |
18198213 |
ttttagacaaacaattaa |
18198230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 213 - 357
Target Start/End: Complemental strand, 52053116 - 52052969
Alignment:
| Q |
213 |
aaagttggaaaatcatgagtagaggatggaatagaaattgataattgagtagtagatgatttatcatccaaatcaagccattga---tct-ctcccttta |
308 |
Q |
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| T |
52053116 |
aaagttgtgaaatcatgagaagatgtaggaatggagattgaaagctgagtggtggatgatttatcatccaaatcaagcca-tgagtttctgctgcttttg |
52053018 |
T |
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| Q |
309 |
tgtggccattcatcaaagaagcgatgaacagttttctgaggttcatctt |
357 |
Q |
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| T |
52053017 |
ggtggccattcatcaaagaaacgatgaaaaatcttctgaggttcttctt |
52052969 |
T |
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