View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_low_48 (Length: 508)
Name: NF13763_low_48
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_low_48 |
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Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 17 - 496
Target Start/End: Complemental strand, 47680590 - 47680108
Alignment:
| Q |
17 |
atacatagatcaatcacgcgcctctctcattatgcttgcttagggatcatcttgccctaattgaacttactttgtcttcnnnnnnncttccgaatatttt |
116 |
Q |
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| T |
47680590 |
atacatagatcaatcacgcgcctctctcattatgcttgcttagggatcatcttgccctaattgaacttaatttgtcttttttttttcttccgaatatttt |
47680491 |
T |
|
| Q |
117 |
gcgcaattgcgaagaataatccttcaagatttatggaatttaaatggatgataaacttttttaaaagttttgatgttgttacatgttcaaggttgaattc |
216 |
Q |
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| T |
47680490 |
gcgcaattgcgaaaaataatccttcaagatttatgggatttaaatggatgataaacttttttaaaagttttgatgttgctacatgttcaaggttgaattc |
47680391 |
T |
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| Q |
217 |
gaatccatgatctttgttaagttataagagaactatatcatctcatctaagtgttctttgataacttacttcgtctttcattaaaaa-----tattttat |
311 |
Q |
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| T |
47680390 |
gaatccatgatctttgttaagttataagagaactatatcatctcatctaagtgttctttgataacttacttcgtctttcattaaaaatgttttttttttt |
47680291 |
T |
|
| Q |
312 |
tttttaggaaaatcataaagcagctgtttaagaaattagacacagtaaaactattttggaacttaggtaaacaatctcttaaaagttaaaaactacttct |
411 |
Q |
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| T |
47680290 |
ttttttggaaaatcttaaagcatctgtttaagaaattaaacacggtaaaactattttggaacttaggtaaac-atctcttaaaagtttacaactacttct |
47680192 |
T |
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| Q |
412 |
attatgcatgtgtatcgttgaagnnnnnnnngaacaaaggatgtgcaaactgattcatatgcaagatgcgactattttgtttgat |
496 |
Q |
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| T |
47680191 |
atcatgcatgggtatcgttaaagtttttttgg-ccaaaggatgtgccaaccgattcatatgcaagatgcgactatgttgtttgat |
47680108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 199 - 274
Target Start/End: Complemental strand, 16552559 - 16552484
Alignment:
| Q |
199 |
atgttcaaggttgaattcgaatccatgatctttgttaagttataagagaactatatcatctcatctaagtgttctt |
274 |
Q |
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|||| ||| |||||||| |||||||| ||||| ||||| ||||||||| || | ||||||||||||||||||||| |
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| T |
16552559 |
atgtccaatgttgaatttgaatccataatcttgattaagctataagagatctgtgtcatctcatctaagtgttctt |
16552484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 267
Target Start/End: Complemental strand, 35207059 - 35206990
Alignment:
| Q |
198 |
catgttcaaggttgaattcgaatccatgatctttgttaagttataagagaactatatcatctcatctaag |
267 |
Q |
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| T |
35207059 |
catgtccaaggttaaattcgaacccagaatcttggttaagttagaagagacctgtttcatctcatctaag |
35206990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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