View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_low_50 (Length: 506)
Name: NF13763_low_50
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_low_50 |
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Alignment Details
Target: chr2 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 18 - 498
Target Start/End: Complemental strand, 2926724 - 2926254
Alignment:
| Q |
18 |
aataatatctcgattatattctatgttcacatttactacaataatcatgcgcnnnnnnnatacatgctctgttttagtttataaaattttaaggcgtttt |
117 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
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| T |
2926724 |
aataatatgtcgattatattctatgttcacatttactacaataatcatgtgc------------tgctctgttttagtttataaaattttaaggcgtttt |
2926637 |
T |
|
| Q |
118 |
cctttgcaattaaaattttaatacattgcctagacgtagatctgtttgatctctgtatcagcgacacttttaatcgaagacttgtacataatgttgtcga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2926636 |
cctttgcaattaaaattttaatacattgcctagacgtagatctgtttgatctctgtatcagcgacacttttaatggaagacttgtacataatgttgtcga |
2926537 |
T |
|
| Q |
218 |
tgcgtctgt-----gtctgtgtctatgctgcatagtcttgcgatatatatgtgattata-aaatatttgatgtgttttgtgtgcgtgtgtggttgatgca |
311 |
Q |
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||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
2926536 |
tgcgtctgttgcgtgtctgtgtctatgatgcatagtcttgcgatatatatgtgattatacaaatatttgatgtgttttgtgtg----tgtggttgatgca |
2926441 |
T |
|
| Q |
312 |
gtggtgttggttatgtggcatatcgcgagttttatccatcggaagtggaggcggttaccgataggaaaaaagtggtggtgttgggaacaggatgggcggc |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2926440 |
gtggtgttggttatgtggcatatcgcgagttttatccatcggaagtggaggcggttaccgataggaaaaaagtggtggtgctgggaacaggatgggcggc |
2926341 |
T |
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| Q |
412 |
aacaagttttatgaagaatctggacagtccaaagtatgaagtacaggtggtttcgcctcgtaactattttgcattcactcctttgct |
498 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2926340 |
aacaagttttatgaagaatctggacagtccaaagtatgaagtacaggtggtttcgcctcgtaactattttgcattcactcctttgct |
2926254 |
T |
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