View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_low_52 (Length: 490)
Name: NF13763_low_52
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_low_52 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 202 - 474
Target Start/End: Original strand, 7094027 - 7094293
Alignment:
| Q |
202 |
atcttgaggcaaggcaacttatgtgtttggatcatctattgattactctttaaatcttgattgttagattaatttaatagcttggagtactatatctttt |
301 |
Q |
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| T |
7094027 |
atcttgaggcaaggcaacttatgtgtttggatcatcttcggattactcattaaatcttgattgttagattaatttaataggttggagtactatatcttt- |
7094125 |
T |
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| Q |
302 |
attttacctaaaattgaattattgtaaaagaatacaaaatcttggtggacaagaaacaaaactcgtgtaaaagtcaaacgtatataaagtcttacatttt |
401 |
Q |
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| T |
7094126 |
attttacctaaaattgaattattgtaaaagaatacaaaatcttggtggacaagaaacaaaactcgtgtaaaagtcaaacgtatataaagtcttacatttt |
7094225 |
T |
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| Q |
402 |
ttatgtaatgtaacttcgagcgatattttggagttttaaatcttattgatgtgaattcactatcaccgtttat |
474 |
Q |
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| T |
7094226 |
tt-----atgtaacttcgagcgatattttggagttttaaatcttattgatgtgaattcactatcaccgtttat |
7094293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 85 - 162
Target Start/End: Original strand, 7093910 - 7093987
Alignment:
| Q |
85 |
cgaaacaatgacatgagagaaacaaatgatgagccgtctctaagcctccacaacaaatcacacaaaatggccttctag |
162 |
Q |
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| T |
7093910 |
cgaaacaatgacatgagagaaacaaatgatgagccgtctctaagcctccacaacaaatcacacaaaatggccttctag |
7093987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 85 - 148
Target Start/End: Complemental strand, 25252499 - 25252436
Alignment:
| Q |
85 |
cgaaacaatgacatgagagaaacaaatgatgagccgtctctaagcctccacaacaaatcacaca |
148 |
Q |
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| T |
25252499 |
cgaaacaaggacatgatagaaaccaatgttgagccgtctctaagcctccgcaaccagtcacaca |
25252436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 86 - 133
Target Start/End: Original strand, 23810964 - 23811011
Alignment:
| Q |
86 |
gaaacaatgacatgagagaaacaaatgatgagccgtctctaagcctcc |
133 |
Q |
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| T |
23810964 |
gaaacaaggacaggagagaaacaaatggtgagccgtctctaagcctcc |
23811011 |
T |
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