View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13763_low_54 (Length: 482)
Name: NF13763_low_54
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_low_54 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 7 - 348
Target Start/End: Complemental strand, 28265521 - 28265181
Alignment:
| Q |
7 |
tcgaagaatatgtgaaaggagttttagctcagattcgtcaaattcagaggtagatttgcgtggagaaggagagagaaacctgagagaggaagaagatgca |
106 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28265521 |
tcgaagaaaatgtgaaaggagttttagctcagattcgtcaaattcagaggtagatttgcgtggagaaggagagagaaacctgagagaggaagaagatgca |
28265422 |
T |
|
| Q |
107 |
gaaggattcgtcggtgtgtggaagagagaagtgcgagaggagaaggaatggaacgcgggaagtgtgtgattgtaactaactgaaaattcaaaaattgaat |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28265421 |
gaaggattcgtcggtgtgtggaagagagaagtgcgagaggagaaggaatggaacgcgggaagtgtgtgattgtaactaactgaaaattcaaaaattgaat |
28265322 |
T |
|
| Q |
207 |
agagtagggcttatatagtttgatgaagtcatcttcccgggaaaattacggttcacgttgtgaatactcaagtgggaactttctcgaattagttgactct |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
28265321 |
agagtagggcttatatagtttgatgaagtcatcttcccgggaaaattacggttcacgttgtgaatgctcaagtgggaactttctcgaattagttgactct |
28265222 |
T |
|
| Q |
307 |
tttttgagaaaaagagtattagtaactacacatctattaata |
348 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
28265221 |
tttttga-caaaagagtattagtaactacacatctattaata |
28265181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 395 - 464
Target Start/End: Complemental strand, 28263450 - 28263381
Alignment:
| Q |
395 |
aacaaggtgtaagtttgatacgataaaaatatggatatcaaatcttttgaaattcaagatacaactaagt |
464 |
Q |
| |
|
||||| |||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
28263450 |
aacaaagtgtaagtgtgatacgatacgaatatggatatcaaaccttttgaaattcaagatacaaccaagt |
28263381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University