View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_low_55 (Length: 482)
Name: NF13763_low_55
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_low_55 |
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Alignment Details
Target: chr4 (Bit Score: 401; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 17 - 465
Target Start/End: Complemental strand, 39584226 - 39583777
Alignment:
| Q |
17 |
caattcaagccagagagatttgacaaagaaggagaagctgataagttgattccatttggattgggaagaagggcttgtcctggagcaaacttagggcaac |
116 |
Q |
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| T |
39584226 |
caattcaagccagagagatttgacaaagaaggagaagctgataagttgattccatttggattgggaagaagggcttgtcctggagcaaacttagggcaac |
39584127 |
T |
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| Q |
117 |
gtacagttagtttaactttggcattacttatacaatgttttgattggaaaagaataaatgaggaagaaattgatatgactgaaggaaaaggagccactac |
216 |
Q |
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| T |
39584126 |
gtacagttagtttaactttggcattacttatccaatgttttgattggaaaagaataagtgaggaagaaattgatatgactgaaggaaaaggagccactac |
39584027 |
T |
|
| Q |
217 |
tccgaagttaattcccttggaggccatgtgtaaagctcgttcaaatgtcatcaacaaggtttatctaaaagttgatgaaaacatgtaagagaaagaaatt |
316 |
Q |
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| T |
39584026 |
tccgaagctaattcccttggaggccatgtgtaaagctcgttcaaatgtcatcaacaaggtttatctaaaagttgatgaaaacatgtaagagaaggaaatt |
39583927 |
T |
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| Q |
317 |
ctgttgccgatgagcttgctgagaatggtcatagtctccctcaactttactctcaacggtgggatttcac-nnnnnnnagttcctttgttagatacagat |
415 |
Q |
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| T |
39583926 |
ctgttgccgatgagcttgctgagaatggtcatagtctccctcaactttactctcaatggtgggatttcacttttttttagttcctttgttagatacagat |
39583827 |
T |
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| Q |
416 |
agcagtagcttaccttacttgagacgatcctttgtataatcttggttcat |
465 |
Q |
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| T |
39583826 |
agcagtagcttaccttacttgagacgatcctttgtataatcttggttcat |
39583777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 152 - 301
Target Start/End: Complemental strand, 39572713 - 39572566
Alignment:
| Q |
152 |
tgttttgattggaaaagaataaatgaggaagaaattgatatgactgaaggaaaaggagccactactccgaagttaattcccttggaggccatgtgtaaag |
251 |
Q |
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||||| |||||||||| ||||| |||| ||||||||||| || | |||||||||||| ||||||||| ||| ||||||||| ||||||||||||| || |
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| T |
39572713 |
tgtttcgattggaaaataataagtgagaaagaaattgat--gagttaaggaaaaggagtcactactccaaagccaattcccttagaggccatgtgtatag |
39572616 |
T |
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| Q |
252 |
ctcgttcaaatgtcatcaacaaggtttatctaaaagttgatgaaaacatg |
301 |
Q |
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| T |
39572615 |
ctcgctcaaatgtcatcaacaaggtttttctaaaagccggtgaaaacatg |
39572566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 100
Target Start/End: Complemental strand, 12151563 - 12151489
Alignment:
| Q |
26 |
ccagagagatttgacaaagaaggagaagctgataagttgattccatttggattgggaagaagggcttgtcctgga |
100 |
Q |
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| T |
12151563 |
ccagagagatttgaaaaagaaggtgaggtaaataagttaattgcatttggttttggaagaagggcttgtcctgga |
12151489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 38974843 - 38974762
Alignment:
| Q |
20 |
ttcaagccagagagatttgacaaagaaggagaagctgataagttgattccatttggattgggaagaagggcttgtcctggag |
101 |
Q |
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| T |
38974843 |
ttcaagcctgagaggtttgagaaagaaggagagttagacaagttgattgcatttgggttaggaagaagggcttgtccaggag |
38974762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 100
Target Start/End: Complemental strand, 38931689 - 38931612
Alignment:
| Q |
23 |
aagccagagagatttgacaaagaaggagaagctgataagttgattccatttggattgggaagaagggcttgtcctgga |
100 |
Q |
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||||||||||||||||| |||||||| ||||| | ||||| ||| ||||||| || ||||| |||| ||| |||||| |
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| T |
38931689 |
aagccagagagatttgaaaaagaaggggaagcaaacaagttaattgcatttggttttggaaggaggggttgccctgga |
38931612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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