View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13763_low_56 (Length: 477)
Name: NF13763_low_56
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_low_56 |
 | |
|
| [»] scaffold0083 (2 HSPs) |
| | |
|
| [»] scaffold0045 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 24)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 200 - 468
Target Start/End: Original strand, 10231993 - 10232261
Alignment:
| Q |
200 |
caaatacaattgacattaatggttgaaccttccgctcacatcacttggcattaatacataagtttttaaatatcatatagaatccttagcgaagactttt |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10231993 |
caaatacaattgacattaatggttgaaccttccgctcacatcacttggcattaatacataagtttttaaatatcatatagaatccttagcgaagactttt |
10232092 |
T |
|
| Q |
300 |
cttaatattttttatttagatttgtgaaactaaactgaaatttcaagggcagagaaacacatcaaaatattaaaatcttgtctccacaccaatatttcat |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10232093 |
cttaatattttttatttagatttgtgaaactaaactgaaatttcaagggcagagaaacacatcaaaatattaaaatcttgtctccacaccaatatttcat |
10232192 |
T |
|
| Q |
400 |
tttgtctttcttttgttatttgtacattggaaccattcatcagtgacttgttactgatgataacatatt |
468 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
10232193 |
tttgtctttcttttgttatttgtacattggaaccattcatcaatgacttgttactgacgataacatatt |
10232261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 200 - 468
Target Start/End: Original strand, 10105891 - 10106160
Alignment:
| Q |
200 |
caaatacaattgacattaatggttgaaccttccgctcacatcacttggcattaatacataagtttttaaatatcatatagaatccttagcgaagactttt |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10105891 |
caaatacaattgacattaatggttgaaccttccgctcacatcacttggcattaatacataagtttttaaatatcatatagaatccttagcgaagactttt |
10105990 |
T |
|
| Q |
300 |
cttaatatttt-ttatttagatttgtgaaactaaactgaaatttcaagggcagagaaacacatcaaaatattaaaatcttgtctccacaccaatatttca |
398 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10105991 |
cttaatatttttttatttagatttgtgaaactaaactgaaatttgaagggcagagaaacacatcaaaatattaaaatcttgtctccacaccaatatttca |
10106090 |
T |
|
| Q |
399 |
ttttgtctttcttttgttatttgtacattggaaccattcatcagtgacttgttactgatgataacatatt |
468 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
10106091 |
ttttgtctttcttttgttatttgtacattggaaccattcatcaatggcttgttactgatgataacatatt |
10106160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 200 - 468
Target Start/End: Complemental strand, 10377431 - 10377162
Alignment:
| Q |
200 |
caaatacaattgacattaatggttgaaccttccgctcacatcacttggcattaatacataagtttttaaatatcatatagaatccttagcgaagactttt |
299 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10377431 |
caaatgcagttgacattaatggttgaaccttccgctcacatcacttggcattaatacataagtttttaaatatcatatagaatccttagcgaagactttt |
10377332 |
T |
|
| Q |
300 |
cttaatattttttatttagatttgtgaaactaaactgaaatttcaagggcagagaaacacatc-aaaatattaaaatcttgtctccacaccaatatttca |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
10377331 |
cttaatattttttatttagatttgtgaaactaaactgaaatttcaagggcagagaaacacatcaaaaatattaaaatcttgtctccacaccaatatttca |
10377232 |
T |
|
| Q |
399 |
ttttgtctttcttttgttatttgtacattggaaccattcatcagtgacttgttactgatgataacatatt |
468 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
10377231 |
ttttgtctttcttttgttatttgtacattggaaccattcatcaatgacttgttactgatgataacatatt |
10377162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 200 - 468
Target Start/End: Original strand, 9997386 - 9997656
Alignment:
| Q |
200 |
caaatacaattgacattaatggttgaacc-ttccgctcacatcacttggcattaatacataagtttttaaatatcatatagaatccttagcgaagacttt |
298 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9997386 |
caaatacaattgacattaatggttgaacccttccactcacatcacttggcattaatacataagtttttaaatatcatatagaatccttagcgaagacttt |
9997485 |
T |
|
| Q |
299 |
tcttaatatttt-ttatttagatttgtgaaactaaactgaaatttcaagggcagagaaacacatcaaaatattaaaatcttgtctccacaccaatatttc |
397 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9997486 |
tcttaatatttttttatttagatttgtgaaactaaactgaaatttgaagggcagagaaacacatcaaaatattaaaatcttgtctccacaccaatatttc |
9997585 |
T |
|
| Q |
398 |
attttgtctttcttttgttatttgtacattggaaccattcatcagtgacttgttactgatgataacatatt |
468 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
9997586 |
attttgtctttcttttgttatttgtacattggaaccattcatcaatggcttgttactgatgataacatatt |
9997656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 10218011 - 10218216
Alignment:
| Q |
1 |
gagataattttgataatttttagtatcaaaatgatctataaatatgttttattttaacagagaggataaggagaattgtactacttcagaaaaaatatat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10218011 |
gagataattttgataatttttagtatcaaaatgatctataaatatgttttattttaacagagaggataaggagaattgtactacttcagaaaaaatatat |
10218110 |
T |
|
| Q |
101 |
cgaaa---tagtacatggttgaaacttcaaagatgcatgttgcatttctttgaatatttattattttgtcagatgtagttccataaaccattattgagcc |
197 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||||||| || |||||||||||| ||||||||||||||||||||| |
|
|
| T |
10218111 |
cgaaatagtagtaaatggttgaaacttcaaagatgcaagttgcatttctttgtatatttattgttatgtcagatgtagctccataaaccattattgagcc |
10218210 |
T |
|
| Q |
198 |
aacaaa |
203 |
Q |
| |
|
|||||| |
|
|
| T |
10218211 |
aacaaa |
10218216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 23 - 193
Target Start/End: Original strand, 10227756 - 10227926
Alignment:
| Q |
23 |
gtatcaaaatgatctataaatatgttttattttaacagagaggataaggagaattgtactacttcagaaaaaatatatcgaaatagtacatggttgaaac |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
10227756 |
gtatcaaaatgatctataaatatgttttattttaacagagaggataaggagaattgtactacttcaaaaaaaatatatcgaaatagtacatggttgaaac |
10227855 |
T |
|
| Q |
123 |
ttcaaagatgcatgttgcatttctttgaatatttattattttgtcagatgtagttccataaaccattattg |
193 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10227856 |
ttcaaagatgcaagttgcatttctttgtatatttattattttgtcagatgtagttccataaaccattattg |
10227926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 23 - 203
Target Start/End: Original strand, 10137925 - 10138106
Alignment:
| Q |
23 |
gtatcaaaatgatctataaatatgttttattttaacagagaggataaggagaattgtactacttcagaaaaaatatatcgaaatagtacatggttgaaac |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10137925 |
gtatcaaaatgatctataaatatgttttattttaacagagatgataaggagaattgtactacttcagaaaaaatatatcgaaatagtacatggttgaaac |
10138024 |
T |
|
| Q |
123 |
ttcaaagatgcatgttgcatttctttgaatatttattattttgtcagatg-tagttccataaaccattattgagccaacaaa |
203 |
Q |
| |
|
||||| |||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
10138025 |
ttcaaggatgcaagttgcatttctttgtatatttattattttgtcagatgcaagttccataaaccattattgagccaacaaa |
10138106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 9996991 - 9997131
Alignment:
| Q |
1 |
gagataattttgataatttttagtatcaaaatgatctataaatatgttttattttaacagagaggataaggagaattgtactacttcagaaaaaatatat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9996991 |
gagataattttgataatttttagtatcaaaatgatctataaatatgttttattttaacagagaggataaggagaattgtactacttcagaaaaaatatat |
9997090 |
T |
|
| Q |
101 |
cgaaatagtacatggttgaaacttcaaagatgcatgttgca |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
9997091 |
cgaaatagtacatggttgaaacttcaaagatgcaagttgca |
9997131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 200 - 357
Target Start/End: Complemental strand, 10365365 - 10365207
Alignment:
| Q |
200 |
caaatacaattgacattaatggttgaaccttcc-gctcacatcacttggcattaatacataagtttttaaatatcatatagaatccttagcgaagacttt |
298 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
10365365 |
caaatgcaattgacattaatggttgaaccttcccgctcacatcacttggcattgatacataagtttttaaatatcatatagaatcctcagcgaagacttt |
10365266 |
T |
|
| Q |
299 |
tcttaatattttttatttagatttgtgaaactaaactgaaatttcaagggcagagaaac |
357 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10365265 |
tcttaatattttttatttagatttgtgaaactaaactgaaatttcaagggcagtgaaac |
10365207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 200 - 340
Target Start/End: Original strand, 10228198 - 10228339
Alignment:
| Q |
200 |
caaatacaattgacattaatggttgaaccttccgctcacatcacttggcattaatacataagtttttaaatatcatatagaatccttagcgaagactttt |
299 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10228198 |
caaatacaattaacattaatggttgaaccttccgctcacagcacttggcattaatacataagtttttaaatatcatatagaatccttagcgaagactttt |
10228297 |
T |
|
| Q |
300 |
cttaata-ttttttatttagatttgtgaaactaaactgaaat |
340 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
10228298 |
cttaatatttttttatttagatttgtgaaactaaactgaaat |
10228339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 344 - 468
Target Start/End: Original strand, 10228376 - 10228505
Alignment:
| Q |
344 |
aagggcagagaaacacatcaaaatattaaaatcttgtctccacaccaatattt-----cattttgtctttcttttgttatttgtacattggaaccattca |
438 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
10228376 |
aagggcagagaaacacatcaaaatattaaaatcttgtctccacaccaatatttcatttcattttgtcattcttttgttatttgtacattggaaccattca |
10228475 |
T |
|
| Q |
439 |
tcagtgacttgttactgatgataacatatt |
468 |
Q |
| |
|
||| |||||||||||||||||||||||||| |
|
|
| T |
10228476 |
tcaatgacttgttactgatgataacatatt |
10228505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 140 - 203
Target Start/End: Original strand, 10218871 - 10218934
Alignment:
| Q |
140 |
catttctttgaatatttattattttgtcagatgtagttccataaaccattattgagccaacaaa |
203 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10218871 |
catttctttgtatatttattattttgtcagatgtagttccataaaccattattgagccaacaaa |
10218934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 140 - 203
Target Start/End: Original strand, 10255780 - 10255843
Alignment:
| Q |
140 |
catttctttgaatatttattattttgtcagatgtagttccataaaccattattgagccaacaaa |
203 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10255780 |
catttctttgtatatttattattttgtcagatgtagttccataaaccattattgagccaacaaa |
10255843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 40 - 144
Target Start/End: Original strand, 10194674 - 10194782
Alignment:
| Q |
40 |
aaatatgttttattttaacagagaggataaggagaattgta----ctacttcagaaaaaatatatcgaaatagtacatggttgaaacttcaaagatgcat |
135 |
Q |
| |
|
|||||| ||||| |||||||| |||||||||| ||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||| | |
|
|
| T |
10194674 |
aaatatattttactttaacagtgaggataaggggaattgtctcttctacttcagaaaaaatatattgaaatggtacatggttgaaacttcaaagatgtaa |
10194773 |
T |
|
| Q |
136 |
gttgcattt |
144 |
Q |
| |
|
||||||||| |
|
|
| T |
10194774 |
gttgcattt |
10194782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 140 - 203
Target Start/End: Original strand, 10018286 - 10018347
Alignment:
| Q |
140 |
catttctttgaatatttattattttgtcagatgtagttccataaaccattattgagccaacaaa |
203 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10018286 |
catttctttgtatatttattatt--gtcagatgtagttccataaaccattattgagccaacaaa |
10018347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 81 - 144
Target Start/End: Original strand, 10087836 - 10087899
Alignment:
| Q |
81 |
ctacttcagaaaaaatatatcgaaatagtacatggttgaaacttcaaagatgcatgttgcattt |
144 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
10087836 |
ctacttcagaaaaaatatattgaaatggtacatggttgaaaattcaaagatgcaagttgcattt |
10087899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 157 - 203
Target Start/End: Original strand, 10122841 - 10122887
Alignment:
| Q |
157 |
attattttgtcagatgtagttccataaaccattattgagccaacaaa |
203 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
10122841 |
attattttgtcagatggagttccataaaccattattgagccaacaaa |
10122887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 73 - 134
Target Start/End: Original strand, 10103266 - 10103328
Alignment:
| Q |
73 |
gaattgtact-acttcagaaaaaatatatcgaaatagtacatggttgaaacttcaaagatgca |
134 |
Q |
| |
|
|||||||||| | |||||||||||| ||| ||||| |||||| |||||||||||||||||||| |
|
|
| T |
10103266 |
gaattgtacttagttcagaaaaaatctatggaaatggtacatcgttgaaacttcaaagatgca |
10103328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 73 - 134
Target Start/End: Original strand, 10214189 - 10214251
Alignment:
| Q |
73 |
gaattgtact-acttcagaaaaaatatatcgaaatagtacatggttgaaacttcaaagatgca |
134 |
Q |
| |
|
|||||||||| | |||||||||||| ||| ||||| |||||| |||||||||||||||||||| |
|
|
| T |
10214189 |
gaattgtacttagttcagaaaaaatctatggaaatggtacatcgttgaaacttcaaagatgca |
10214251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 432 - 474
Target Start/End: Complemental strand, 10365196 - 10365154
Alignment:
| Q |
432 |
ccattcatcagtgacttgttactgatgataacatattcttcga |
474 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
10365196 |
ccattcatcaatgacttgttactgatgataacatattgttcga |
10365154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 10499749 - 10499803
Alignment:
| Q |
142 |
tttctttgaatatttattattttgtcagatgtagttccataaaccattattgagc |
196 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||| | |||||||||||||| ||||| |
|
|
| T |
10499749 |
tttctttgtatatttattatttagtcagatgtggatccataaaccattaatgagc |
10499803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 85 - 134
Target Start/End: Original strand, 10223233 - 10223282
Alignment:
| Q |
85 |
ttcagaaaaaatatatcgaaatagtacatggttgaaacttcaaagatgca |
134 |
Q |
| |
|
|||||||||||| ||| ||||| |||||| |||||||||||||||||||| |
|
|
| T |
10223233 |
ttcagaaaaaatctatggaaatggtacatcgttgaaacttcaaagatgca |
10223282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 156 - 203
Target Start/End: Original strand, 10194806 - 10194852
Alignment:
| Q |
156 |
tattattttgtcagatgtagttccataaaccattattgagccaacaaa |
203 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||| |||||||||||| |
|
|
| T |
10194806 |
tattattttgtcagatgtagatccattaaccatta-tgagccaacaaa |
10194852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 103 - 144
Target Start/End: Original strand, 10075788 - 10075831
Alignment:
| Q |
103 |
aaatagtacatggttgaaacttc--aaagatgcatgttgcattt |
144 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
10075788 |
aaatagtacatggttgaaacttcaaaaagatgcaagttgcattt |
10075831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 168; Significance: 7e-90; HSPs: 13)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 26797482 - 26797687
Alignment:
| Q |
1 |
gagataattttgataatttttagtatcaaaatgatctataaatatgttttattttaacagagaggataaggagaattgtactacttcagaaaaaatatat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26797482 |
gagataattttgataatttttagtatcaaaatgatctataaatatgttttattttaacagagaggataaggagaattgtactacttcagaaaaaatatat |
26797581 |
T |
|
| Q |
101 |
cgaaa---tagtacatggttgaaacttcaaagatgcatgttgcatttctttgaatatttattattttgtcagatgtagttccataaaccattattgagcc |
197 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||||||| || |||||||||||| ||||||||||||||||||||| |
|
|
| T |
26797582 |
cgaaatagtagtaaatggttgaaacttcaaagatgcaagttgcatttctttgtatatttattgttatgtcagatgtagctccataaaccattattgagcc |
26797681 |
T |
|
| Q |
198 |
aacaaa |
203 |
Q |
| |
|
|||||| |
|
|
| T |
26797682 |
aacaaa |
26797687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 23 - 193
Target Start/End: Original strand, 26801133 - 26801303
Alignment:
| Q |
23 |
gtatcaaaatgatctataaatatgttttattttaacagagaggataaggagaattgtactacttcagaaaaaatatatcgaaatagtacatggttgaaac |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
26801133 |
gtatcaaaatgatctataaatatgttttattttaacagagaggataaggagaattgtactacttcaaaaaaaatatatcgaaatagtacatggttgaaac |
26801232 |
T |
|
| Q |
123 |
ttcaaagatgcatgttgcatttctttgaatatttattattttgtcagatgtagttccataaaccattattg |
193 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26801233 |
ttcaaagatgcaagttgcatttctttgtatatttattattttgtcagatgtagttccataaaccattattg |
26801303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 23 - 193
Target Start/End: Original strand, 26808683 - 26808853
Alignment:
| Q |
23 |
gtatcaaaatgatctataaatatgttttattttaacagagaggataaggagaattgtactacttcagaaaaaatatatcgaaatagtacatggttgaaac |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
26808683 |
gtatcaaaatgatctataaatatgttttattttaacagagaggataaggagaattgtactacttcaaaaaaaatatatcgaaatagtacatggttgaaac |
26808782 |
T |
|
| Q |
123 |
ttcaaagatgcatgttgcatttctttgaatatttattattttgtcagatgtagttccataaaccattattg |
193 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26808783 |
ttcaaagatgcaagttgcatttctttgtatatttattattttgtcagatgtagttccataaaccattattg |
26808853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 23 - 193
Target Start/End: Original strand, 26816073 - 26816243
Alignment:
| Q |
23 |
gtatcaaaatgatctataaatatgttttattttaacagagaggataaggagaattgtactacttcagaaaaaatatatcgaaatagtacatggttgaaac |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
26816073 |
gtatcaaaatgatctataaatatgttttattttaacagagaggataaggagaattgtactacttcaaaaaaaatatatcgaaatagtacatggttgaaac |
26816172 |
T |
|
| Q |
123 |
ttcaaagatgcatgttgcatttctttgaatatttattattttgtcagatgtagttccataaaccattattg |
193 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26816173 |
ttcaaagatgcaagttgcatttctttgtatatttattattttgtcagatgtagttccataaaccattattg |
26816243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 23 - 193
Target Start/End: Original strand, 26823710 - 26823880
Alignment:
| Q |
23 |
gtatcaaaatgatctataaatatgttttattttaacagagaggataaggagaattgtactacttcagaaaaaatatatcgaaatagtacatggttgaaac |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
26823710 |
gtatcaaaatgatctataaatatgttttattttaacagagaggataaggagaattgtactacttcaaaaaaaatatatcgaaatagtacatggttgaaac |
26823809 |
T |
|
| Q |
123 |
ttcaaagatgcatgttgcatttctttgaatatttattattttgtcagatgtagttccataaaccattattg |
193 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26823810 |
ttcaaagatgcaagttgcatttctttgtatatttattattttgtcagatgtagttccataaaccattattg |
26823880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 200 - 340
Target Start/End: Original strand, 26801575 - 26801716
Alignment:
| Q |
200 |
caaatacaattgacattaatggttgaaccttccgctcacatcacttggcattaatacataagtttttaaatatcatatagaatccttagcgaagactttt |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26801575 |
caaatacaattgacattaatggttgaaccttccgctcacagcacttggcattaatacataagtttttaaatatcatatagaatccttagcgaagactttt |
26801674 |
T |
|
| Q |
300 |
cttaata-ttttttatttagatttgtgaaactaaactgaaat |
340 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
26801675 |
cttaatatttttttatttagatttgtgaaactaaactgaaat |
26801716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 200 - 340
Target Start/End: Original strand, 26809125 - 26809266
Alignment:
| Q |
200 |
caaatacaattgacattaatggttgaaccttccgctcacatcacttggcattaatacataagtttttaaatatcatatagaatccttagcgaagactttt |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26809125 |
caaatacaattgacattaatggttgaaccttccgctcacagcacttggcattaatacataagtttttaaatatcatatagaatccttagcgaagactttt |
26809224 |
T |
|
| Q |
300 |
cttaata-ttttttatttagatttgtgaaactaaactgaaat |
340 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
26809225 |
cttaatatttttttatttagatttgtgaaactaaactgaaat |
26809266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 200 - 340
Target Start/End: Original strand, 26824152 - 26824293
Alignment:
| Q |
200 |
caaatacaattgacattaatggttgaaccttccgctcacatcacttggcattaatacataagtttttaaatatcatatagaatccttagcgaagactttt |
299 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26824152 |
caaatacaattaacattaatggttgaaccttccgctcacagcacttggcattaatacataagtttttaaatatcatatagaatccttagcgaagactttt |
26824251 |
T |
|
| Q |
300 |
cttaata-ttttttatttagatttgtgaaactaaactgaaat |
340 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
26824252 |
cttaatatttttttatttagatttgtgaaactaaactgaaat |
26824293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 344 - 468
Target Start/End: Original strand, 26801753 - 26801882
Alignment:
| Q |
344 |
aagggcagagaaacacatcaaaatattaaaatcttgtctccacaccaatattt-----cattttgtctttcttttgttatttgtacattggaaccattca |
438 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
26801753 |
aagggcagagaaacacatcaaaatattaaaatcttgtctccacaccaatatttcatttcattttgtcattcttttgttatttgtacattggaaccattca |
26801852 |
T |
|
| Q |
439 |
tcagtgacttgttactgatgataacatatt |
468 |
Q |
| |
|
||| |||||||||||||||||||||||||| |
|
|
| T |
26801853 |
tcaatgacttgttactgatgataacatatt |
26801882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 344 - 468
Target Start/End: Original strand, 26809303 - 26809432
Alignment:
| Q |
344 |
aagggcagagaaacacatcaaaatattaaaatcttgtctccacaccaatattt-----cattttgtctttcttttgttatttgtacattggaaccattca |
438 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
26809303 |
aagggcagagaaacacatcaaaatattaaaatcttgtctccacaccaatatttcatttcattttgtcattcttttgttatttgtacattggaaccattca |
26809402 |
T |
|
| Q |
439 |
tcagtgacttgttactgatgataacatatt |
468 |
Q |
| |
|
||| |||||||||||||||||||||||||| |
|
|
| T |
26809403 |
tcaatgacttgttactgatgataacatatt |
26809432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 344 - 468
Target Start/End: Original strand, 26824330 - 26824459
Alignment:
| Q |
344 |
aagggcagagaaacacatcaaaatattaaaatcttgtctccacaccaatattt-----cattttgtctttcttttgttatttgtacattggaaccattca |
438 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
26824330 |
aagggcagagaaacacatcaaaatattaaaatcttgtctccacaccaatatttcatttcattttgtcattcttttgttatttgtacattggaaccattca |
26824429 |
T |
|
| Q |
439 |
tcagtgacttgttactgatgataacatatt |
468 |
Q |
| |
|
||| |||||||||||||||||||||||||| |
|
|
| T |
26824430 |
tcaatgacttgttactgatgataacatatt |
26824459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 140 - 203
Target Start/End: Original strand, 26798342 - 26798405
Alignment:
| Q |
140 |
catttctttgaatatttattattttgtcagatgtagttccataaaccattattgagccaacaaa |
203 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26798342 |
catttctttgtatatttattattttgtcagatgtagttccataaaccattattgagccaacaaa |
26798405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 73 - 134
Target Start/End: Original strand, 26818578 - 26818640
Alignment:
| Q |
73 |
gaattgtact-acttcagaaaaaatatatcgaaatagtacatggttgaaacttcaaagatgca |
134 |
Q |
| |
|
|||||||||| | |||||||||||| ||| ||||| |||||| |||||||||||||||||||| |
|
|
| T |
26818578 |
gaattgtacttagttcagaaaaaatctatggaaatggtacatcgttgaaacttcaaagatgca |
26818640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 151 - 203
Target Start/End: Complemental strand, 51923 - 51871
Alignment:
| Q |
151 |
atatttattattttgtcagatgtagttccataaaccattattgagccaacaaa |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
51923 |
atatttattattttgtcagatgtagttccaaaaaccattattgagccaacaaa |
51871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 79 - 144
Target Start/End: Complemental strand, 52012 - 51948
Alignment:
| Q |
79 |
tactacttcagaaaaaatatatcgaaatagtacatggttgaaacttcaaagatgcatgttgcattt |
144 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
52012 |
tactacttcagaaaatg-atatcgaaatagtacatggttgaaacttcaaagatacaagttgcattt |
51948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 43 - 84
Target Start/End: Original strand, 86566 - 86607
Alignment:
| Q |
43 |
tatgttttattttaacagagaggataaggagaattgtactac |
84 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
86566 |
tatgttttattttaacagagaggataaagagaattgtactac |
86607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 142 - 203
Target Start/End: Original strand, 26891605 - 26891666
Alignment:
| Q |
142 |
tttctttgaatatttattattttgtcagatgtagttccataaaccattattgagccaacaaa |
203 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||| ||||||| |||||| |||||||||||| |
|
|
| T |
26891605 |
tttctttatatacttattattttgtcagatgtagatccataatccattaatgagccaacaaa |
26891666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 175
Target Start/End: Original strand, 11484140 - 11484173
Alignment:
| Q |
142 |
tttctttgaatatttattattttgtcagatgtag |
175 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |
|
|
| T |
11484140 |
tttctttgtatatttattattttgtcagatgtag |
11484173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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