View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13763_low_58 (Length: 475)
Name: NF13763_low_58
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_low_58 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 14 - 453
Target Start/End: Complemental strand, 7056637 - 7056198
Alignment:
| Q |
14 |
atatcaatgggcaacgaaacacaaaccgaaaccgggttcaagttagttgggttcaaaaaattcatccgaaccaacccaaaaacagaccgtttcaaagtaa |
113 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7056637 |
atatcaatgggcaacgaaacacaaaccaaaaccgggttcaagttagttgggttcaaaaaattcatccgaaccaacccaaaaacagaccgtttcaaagtaa |
7056538 |
T |
|
| Q |
114 |
aacgcttccaccacgtggaattctggtgcaccgacgcaaccaacaccgcacttcgtttctctcaaggacttggtatgccaatcgtcgctaaatccgacct |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7056537 |
aacgcttccaccacgtggaattctggtgcaccgacgcaaccaacaccgcacttcgtttctctcaaggacttggtatgccaatcgtcgctaaatccgacct |
7056438 |
T |
|
| Q |
214 |
gtccaccggaaacctaattcacgcttcctatctcctccgctctggcgacctaaatttcctcttctccgccccatattccccttccatttctctctcctcg |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7056437 |
gtccaccggaaacctaattcacgcttcctatctcctccgctctggcgacctcaatttcctcttctccgccccatattccccttccatttctctctcctcg |
7056338 |
T |
|
| Q |
314 |
ccttcctcaaccgcctccattccaaccttctctgcctccacttgcttctccttctgcgcttcacacggtcttgccgttcgcgccatcgctattgaagtca |
413 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7056337 |
ccttcctcaaccgcctccattcccaccttctctgcctccacttgcttctccttctgcgcttcacacggccttgccgttcgcgccatcgctattgaagtcg |
7056238 |
T |
|
| Q |
414 |
acgatgcagaactcgccttcacggtcagcgtaaaccacgg |
453 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
7056237 |
acgacgcagaactcgccttcactgtcagcgtaaaccacgg |
7056198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 20 - 368
Target Start/End: Complemental strand, 39642769 - 39642421
Alignment:
| Q |
20 |
atgggcaacgaaacacaaaccgaaaccgggttcaagttagttgggttcaaaaaattcatccgaaccaacccaaaaacagaccgtttcaaagtaaaacgct |
119 |
Q |
| |
|
|||| |||||| ||||| | | |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
39642769 |
atggccaacgagacacacaaccaaaccgggttcaagttagttgggtgcaaaaatttcatccgaaccaacccaaaaacagaccggttcaaagtaaaacact |
39642670 |
T |
|
| Q |
120 |
tccaccacgtggaattctggtgcaccgacgcaaccaacaccgcacttcgtttctctcaaggacttggtatgccaatcgtcgctaaatccgacctgtccac |
219 |
Q |
| |
|
|||||||||| || |||||||||||||||||||| ||||| |||| ||||||||||| ||||| || |||||||||||||| ||||||||||| ||||| |
|
|
| T |
39642669 |
tccaccacgtcgagttctggtgcaccgacgcaacaaacactgcacaccgtttctctcatggactcggcatgccaatcgtcgccaaatccgacctctccac |
39642570 |
T |
|
| Q |
220 |
cggaaacctaattcacgcttcctatctcctccgctctggcgacctaaatttcctcttctccgccccatattccccttccatttctctctcctcgccttcc |
319 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||| || ||||| |||||||||||| ||||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
39642569 |
cggaaaccttactcacgcttcctatctcctccgctccggtgacctcaatttcctcttcaccgccgcatattccccttccatttctctctcctcaccttcc |
39642470 |
T |
|
| Q |
320 |
tcaaccgcctccattccaaccttctctgcctccacttgcttctccttct |
368 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
39642469 |
tcaaccgcctccattccaactttctccccctccacttgcttctccttct |
39642421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 30 - 457
Target Start/End: Original strand, 39679475 - 39679902
Alignment:
| Q |
30 |
aaacacaaaccgaaaccgggttcaagttagttgggttcaaaaaattcatccgaaccaacccaaaaacagaccgtttcaaagtaaaacgcttccaccacgt |
129 |
Q |
| |
|
|||| |||||| ||||||||||||| |||||||| ||||| || ||| || || ||||||||||| ||||||| ||||| |||||||||||||||||||| |
|
|
| T |
39679475 |
aaacccaaacccaaaccgggttcaaattagttggcttcaagaacttcgtcagagccaacccaaaatcagaccggttcaatgtaaaacgcttccaccacgt |
39679574 |
T |
|
| Q |
130 |
ggaattctggtgcaccgacgcaaccaacaccgcacttcgtttctctcaaggacttggtatgccaatcgtcgctaaatccgacctgtccaccggaaaccta |
229 |
Q |
| |
|
|| |||||||||||||||||||| |||||||||| || |||||||| ||||| || ||||| || ||||||||||||||||| ||||||||||||||| |
|
|
| T |
39679575 |
cgagttctggtgcaccgacgcaacaaacaccgcacgccgcttctctcacggactcggaatgccgattgtcgctaaatccgacctctccaccggaaaccta |
39679674 |
T |
|
| Q |
230 |
attcacgcttcctatctcctccgctctggcgacctaaatttcctcttctccgccccatattccccttccatttctctctcctcgccttcctcaaccgcct |
329 |
Q |
| |
|
| ||||||||| |||||||||||||| |||||||| || ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
39679675 |
actcacgcttcttatctcctccgctccggcgacctcaacttcctcttctccgccgcatattccccttccatttctctctcctcaccttcctcaaccgccg |
39679774 |
T |
|
| Q |
330 |
ccattccaaccttctctgcctccacttgcttctccttctgcgcttcacacggtcttgccgttcgcgccatcgctattgaagtcaacgatgcagaactcgc |
429 |
Q |
| |
|
| || || || ||||| || ||||||||||||||||||| |||||| ||||| || ||||| || || | ||| |||||||| | || || ||| |||| |
|
|
| T |
39679775 |
caatccccactttctccgcttccacttgcttctccttctccgcttcccacggcctcgccgtccgtgctgttgctgttgaagtcgaagacgctgaagtcgc |
39679874 |
T |
|
| Q |
430 |
cttcacggtcagcgtaaaccacggtgca |
457 |
Q |
| |
|
||||| ||||||||||| ||||||| |
|
|
| T |
39679875 |
tttcaccaccagcgtaaacctcggtgca |
39679902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 37 - 349
Target Start/End: Complemental strand, 39638060 - 39637748
Alignment:
| Q |
37 |
aaccgaaaccgggttcaagttagttgggttcaaaaaattcatccgaaccaacccaaaaacagaccgtttcaaagtaaaacgcttccaccacgtggaattc |
136 |
Q |
| |
|
|||| |||||||||||||||||||||| || ||||| ||| || || ||||||||||| ||||| |||||| | |||||||| |||||||| || ||| |
|
|
| T |
39638060 |
aacccaaaccgggttcaagttagttggatttaaaaacttcgtctgagccaacccaaaatcagacttattcaaattcaaacgctttcaccacgtcgagttc |
39637961 |
T |
|
| Q |
137 |
tggtgcaccgacgcaaccaacaccgcacttcgtttctctcaaggacttggtatgccaatcgtcgctaaatccgacctgtccaccggaaacctaattcacg |
236 |
Q |
| |
|
|||||||| |||||||| |||||||||| || |||||||| ||||| || ||||||||||| |||||||||||||| ||||| |||| ||||| ||| | |
|
|
| T |
39637960 |
tggtgcactgacgcaacaaacaccgcacgccgattctctcacggactcggaatgccaatcgttgctaaatccgacctctccactggaatcctaactcatg |
39637861 |
T |
|
| Q |
237 |
cttcctatctcctccgctctggcgacctaaatttcctcttctccgccccatattccccttccatttctctctcctcgccttcctcaaccgcctccattcc |
336 |
Q |
| |
|
||||||| ||||||||||| |||||||| ||| |||| |||||||| | || |||||||| ||||| |||||||| |||||| |||| ||||||||||| |
|
|
| T |
39637860 |
cttcctacctcctccgctccggcgacctcaatctccttttctccgcagcttactccccttctatttcactctcctcaccttccccaacggcctccattcc |
39637761 |
T |
|
| Q |
337 |
aaccttctctgcc |
349 |
Q |
| |
|
||||||||||| |
|
|
| T |
39637760 |
ctccttctctgcc |
39637748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University