View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13763_low_59 (Length: 474)

Name: NF13763_low_59
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13763_low_59
NF13763_low_59
[»] chr5 (15 HSPs)
chr5 (1-457)||(3299745-3300209)
chr5 (1-457)||(3392638-3393102)
chr5 (1-248)||(1163333-1163583)
chr5 (52-153)||(1850192-1850293)
chr5 (280-399)||(1163164-1163288)
chr5 (108-248)||(40418614-40418758)
chr5 (244-334)||(1850346-1850444)
chr5 (108-248)||(38988036-38988180)
chr5 (108-248)||(39880151-39880297)
chr5 (391-440)||(39880491-39880540)
chr5 (108-248)||(39726755-39726906)
chr5 (246-327)||(39880327-39880405)
chr5 (246-327)||(40418782-40418860)
chr5 (274-327)||(38988229-38988282)
chr5 (6-67)||(40418512-40418573)
[»] chr4 (4 HSPs)
chr4 (104-248)||(44444395-44444543)
chr4 (108-203)||(25911951-25912046)
chr4 (392-433)||(25911657-25911698)
chr4 (291-327)||(25911785-25911821)


Alignment Details
Target: chr5 (Bit Score: 432; Significance: 0; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 1 - 457
Target Start/End: Original strand, 3299745 - 3300209
Alignment:
Q  1 taaaagatctacaacaagacactaaactcctcttcgaccgaagagcaatctaccgaaatcgaaccaactgccatccatttgacacaaccatcaaatcccc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3299745 taaaagatctacaacaagacactaaactcctcttcgaccgaagagcaatctaccgaaatcgaaccaactgccatccatttgacacaaccatcaaatcccc 3299844  T
Q  101 ctttagaagacctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3299845 ctttagaagacctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaa 3299944  T
Q  201 taaccaaaacaaggaagatgcttttcatttattagcttttttctatttattccgataacaagaacaactagttcttttcacttactctgttgcaatttgc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3299945 taaccaaaacaaggaagatgcttttcatttattagcttttttctatttattccgataacaagaacaactagttcttttcacttactctgttgcaatttgc 3300044  T
Q  301 aatttctgtttgatatttatgtttattagaacaagttatgtgtgcttcccaaaccatgcatgtcattaattatattcggcatataaagta--------ca 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||    
T  3300045 aatttctgtttgatatttatgtttattagaacaagttatgtgtgcttcccaaaccatgcatgtcattaattatattcggcatataaagtacctttcacca 3300144  T
Q  393 tttcacctcacccttccatttactttcctgtcttccatgtgttgcactcaaacatggctagtttt 457  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3300145 tttcacctcaccctttcatttactttcctgtcttccatgtgttgcactcaaacatggctagtttt 3300209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 1 - 457
Target Start/End: Original strand, 3392638 - 3393102
Alignment:
Q  1 taaaagatctacaacaagacactaaactcctcttcgaccgaagagcaatctaccgaaatcgaaccaactgccatccatttgacacaaccatcaaatcccc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3392638 taaaagatctacaacaagacactaaactcctcttcgaccgaagagcaatctaccgaaatcgaaccaactgccatccatttgacacaaccatcaaatcccc 3392737  T
Q  101 ctttagaagacctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3392738 ctttagaagacctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaa 3392837  T
Q  201 taaccaaaacaaggaagatgcttttcatttattagcttttttctatttattccgataacaagaacaactagttcttttcacttactctgttgcaatttgc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3392838 taaccaaaacaaggaagatgcttttcatttattagcttttttctatttattccgataacaagaacaactagttcttttcacttactctgttgcaatttgc 3392937  T
Q  301 aatttctgtttgatatttatgtttattagaacaagttatgtgtgcttcccaaaccatgcatgtcattaattatattcggcatataaagta--------ca 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||    
T  3392938 aatttctgtttgatatttatgtttattagaacaagttatgtgtgcttcccaaaccatgcatgtcattaattatattcggcatataaagtacctttcacca 3393037  T
Q  393 tttcacctcacccttccatttactttcctgtcttccatgtgttgcactcaaacatggctagtttt 457  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3393038 tttcacctcaccctttcatttactttcctgtcttccatgtgttgcactcaaacatggctagtttt 3393102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 1163583 - 1163333
Alignment:
Q  1 taaaagatctacaacaagacactaaactcctcttcgaccgaagagcaatctaccgaaatcgaaccaactgccatccatttgacacaaccatcaaatcccc 100  Q
    |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||| |||||||||||| || | ||  | ||| ||||||    
T  1163583 taaaagatctacaacaagaccctaaactcctcttcgaccaaagagcaatctaccgaaatccaacctactgccatccatctggcccactcttcagatcccc 1163484  T
Q  101 ctttagaagacctttttatccattggaggatttgcttgatggatgat---ccacttacaagcttaaacaaacatcacttctattgatgttttgttacttc 197  Q
    ||||   |||||||||| |||||||||||||||||||||||||||||   | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1163483 cttttatagacctttttttccattggaggatttgcttgatggatgatgatctacttacaagcttaaacaaacatcacttctattgatgttttgttacttc 1163384  T
Q  198 caataaccaaaacaaggaagatgcttttcatttattagcttttttctattt 248  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  1163383 caataacaaaaacaaggaagatgcttttcatttattagcttttttatattt 1163333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 52 - 153
Target Start/End: Original strand, 1850192 - 1850293
Alignment:
Q  52 accgaaatcgaaccaactgccatccatttgacacaaccatcaaatccccctttagaagacctttttatccattggaggatttgcttgatggatgatccac 151  Q
    ||||||||| ||||||||||||||||| || | || |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  1850192 accgaaatccaaccaactgccatccatctggcccacccatcagatccccttttagaagacctttttatccattggaggatttgcttgatggatgatctac 1850291  T
Q  152 tt 153  Q
    ||    
T  1850292 tt 1850293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 280 - 399
Target Start/End: Complemental strand, 1163288 - 1163164
Alignment:
Q  280 acttactctgttgcaatttgcaatttctgtttgatatttatgtttattagaacaagttatgt---------gtgcttcccaaaccatgcatgtcattaat 370  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||| ||||    ||    
T  1163288 acttactttgttgcaatttgcaatttctgtttgatatttatgtttattagaacaagttatgtgtgttgatcgtgcttcccaaaccatgcctgtc----at 1163193  T
Q  371 tatattcggcatataaagtacatttcacc 399  Q
    ||||||||||||||||||| | |||||||    
T  1163192 tatattcggcatataaagttcctttcacc 1163164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 108 - 248
Target Start/End: Original strand, 40418614 - 40418758
Alignment:
Q  108 agacctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataac--c 205  Q
    |||||||||  |||||||||||| |||||||| |||||||| | |||| |||||||||||| ||||||| | || ||||||||||  ||||||||||  |    
T  40418614 agaccttttgttccattggaggacttgcttgacggatgatctagttactagcttaaacaaaaatcacttttgttaatgttttgtttgttccaataacaac 40418713  T
Q  206 aaaa--caaggaagatgcttttcatttattagcttttttctattt 248  Q
    ||||  |||||||||||||||||||||||||| || |||||||||    
T  40418714 aaaaatcaaggaagatgcttttcatttattaggttctttctattt 40418758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 244 - 334
Target Start/End: Original strand, 1850346 - 1850444
Alignment:
Q  244 tatttattccgataacaagaacaacta--------gttcttttcacttactctgttgcaatttgcaatttctgtttgatatttatgtttattagaacaa 334  Q
    |||||||||||||||||||||||| ||        |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  1850346 tatttattccgataacaagaacaaatacttaaaaggttcttttcacttactttgttgcaatttacaatttctgtttgatatttatgtttattagaacaa 1850444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 108 - 248
Target Start/End: Original strand, 38988036 - 38988180
Alignment:
Q  108 agacctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataacca- 206  Q
    ||||||||| ||||||||||||| |||||||| |||||||| | | || |||||||||||| ||||||| | |||||||||||||  |||||||||| |     
T  38988036 agaccttttgatccattggaggacttgcttgacggatgatctagtcactagcttaaacaaaaatcacttttgttgatgttttgtttgttccaataacaac 38988135  T
Q  207 ---aaacaaggaagatgcttttcatttattagcttttttctattt 248  Q
       || |||||||| |||| |||||||||||| || |||||||||    
T  38988136 aacaatcaaggaagctgctcttcatttattaggttctttctattt 38988180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 108 - 248
Target Start/End: Original strand, 39880151 - 39880297
Alignment:
Q  108 agacctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataacca- 206  Q
    |||||||||| |||||||||||| |||||||| |||||||| | |||| |||||||||||| ||||||| | |||||||||| ||  |||||||||  |     
T  39880151 agacctttttttccattggaggacttgcttgacggatgatctagttactagcttaaacaaaaatcacttttgttgatgtttt-tttgttccaataataac 39880249  T
Q  207 ------aaacaaggaagatgcttttcatttattagcttttttctattt 248  Q
          || |||||||||||||||||||||||||| || |||||||||    
T  39880250 aacaacaatcaaggaagatgcttttcatttattaggttctttctattt 39880297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 391 - 440
Target Start/End: Original strand, 39880491 - 39880540
Alignment:
Q  391 catttcacctcacccttccatttactttcctgtcttccatgtgttgcact 440  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  39880491 catttcacctcaccctaccatttactttcctgtcttccatatgttgcact 39880540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 108 - 248
Target Start/End: Original strand, 39726755 - 39726906
Alignment:
Q  108 agacctttttatccattggaggatttgcttgatggatgatccac----ttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataa 203  Q
    ||||||||| ||||||||||||| |||||||| |||||||| |     |||| |||||||||||| ||||| | | |||||||||||||  |||||||||    
T  39726755 agaccttttgatccattggaggacttgcttgacggatgatctagctagttactagcttaaacaaaaatcacctttgttgatgttttgtttgttccaataa 39726854  T
Q  204 ccaaaacaa-------ggaagatgcttttcatttattagcttttttctattt 248  Q
      | |||||       ||||||||||||||||||||||| || |||||||||    
T  39726855 taacaacaacaatcaaggaagatgcttttcatttattaggttctttctattt 39726906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 246 - 327
Target Start/End: Original strand, 39880327 - 39880405
Alignment:
Q  246 tttattccgataacaagaacaactagttcttttcacttactctgttgcaatttgcaatttctgtttgatatttatgtttatt 327  Q
    |||||||| || ||||||||||   || |||||||||||   || |||| ||||||||||||||||||||||||||||||||    
T  39880327 tttattccaatgacaagaacaa---gtgcttttcacttaggttgctgcagtttgcaatttctgtttgatatttatgtttatt 39880405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 246 - 327
Target Start/End: Original strand, 40418782 - 40418860
Alignment:
Q  246 tttattccgataacaagaacaactagttcttttcacttactctgttgcaatttgcaatttctgtttgatatttatgtttatt 327  Q
    |||||||| || ||||||||||   || |||||||||||   || |||| ||||||||||||||||||||||||||||||||    
T  40418782 tttattccaatgacaagaacaa---gtgcttttcacttaggttgctgcagtttgcaatttctgtttgatatttatgtttatt 40418860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 274 - 327
Target Start/End: Original strand, 38988229 - 38988282
Alignment:
Q  274 cttttcacttactctgttgcaatttgcaatttctgtttgatatttatgtttatt 327  Q
    |||||||||||   || |||| ||||||||||||||||||||||||||||||||    
T  38988229 cttttcacttaggttgctgcagtttgcaatttctgtttgatatttatgtttatt 38988282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 40418512 - 40418573
Alignment:
Q  6 gatctacaacaagacactaaactcctcttcgaccgaagagcaatctaccgaaatcgaaccaa 67  Q
    |||||||||||||||||||||||||||||| ||  |||||||  ||||||| ||| ||||||    
T  40418512 gatctacaacaagacactaaactcctcttcaacgtaagagcagcctaccgagatcaaaccaa 40418573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 5e-23; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 104 - 248
Target Start/End: Complemental strand, 44444543 - 44444395
Alignment:
Q  104 tagaagacctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataa 203  Q
    ||||||| |||||  |||||| ||||| |||||||| |||||||| | ||||||||||||||||| ||||||| | |||||||||||||   ||||||||    
T  44444543 tagaagatcttttgttccattagaggacttgcttgacggatgatctagttacaagcttaaacaaaaatcacttttgttgatgttttgtttactccaataa 44444444  T
Q  204 ccaaaa----caaggaagatgcttttcatttattagcttttttctattt 248  Q
    | ||||    ||||||| |||| ||||||||||||| || |||||||||    
T  44444443 cgaaaacaatcaaggaatatgcctttcatttattaggttatttctattt 44444395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 108 - 203
Target Start/End: Complemental strand, 25912046 - 25911951
Alignment:
Q  108 agacctttttatccattggaggatttgcttgatggatgatccacttacaagcttaaacaaacatcacttctattgatgttttgttacttccaataa 203  Q
    |||||||||  |||||||||||| |||||||| |||||||| | |||| |||||||||||| ||||||| | |||||||||||||  |||||||||    
T  25912046 agaccttttgttccattggaggacttgcttgacggatgatctagttactagcttaaacaaaaatcacttttgttgatgttttgtttgttccaataa 25911951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 392 - 433
Target Start/End: Complemental strand, 25911698 - 25911657
Alignment:
Q  392 atttcacctcacccttccatttactttcctgtcttccatgtg 433  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  25911698 atttcacctcaccctaccatttactttcctgtcttccatgtg 25911657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 291 - 327
Target Start/End: Complemental strand, 25911821 - 25911785
Alignment:
Q  291 tgcaatttgcaatttctgtttgatatttatgtttatt 327  Q
    |||| |||||||||||||||||||| |||||||||||    
T  25911821 tgcagtttgcaatttctgtttgatacttatgtttatt 25911785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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