View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_low_61 (Length: 464)
Name: NF13763_low_61
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_low_61 |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 66 - 386
Target Start/End: Original strand, 31440319 - 31440640
Alignment:
| Q |
66 |
ttcttcaaactttgcaccaatgttccaacgagtataaaacatgattgagctacaaagagtatttttcattaacaatgaagttggatttgtttcctccgga |
165 |
Q |
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| T |
31440319 |
ttcttcaaacttcgcaccaatgttccaacaagtatgaaacatgattgagctgcaaagagtatttttcattaacaatgaagttggatttttttcctccgga |
31440418 |
T |
|
| Q |
166 |
ctttggatgattgtgtggtggataaaactatagctttgatggatgggttttggtatta-gcaactatgttt-caattgtcacaattcttaagtaatttgg |
263 |
Q |
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| T |
31440419 |
gtttggatgattgtgtggtggacaaaactatagttttgatggatgagttttggtattaggcaattatgtttccatttgtcacaagttttaagtaatctgg |
31440518 |
T |
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| Q |
264 |
ttgacttggatttaggttctttgaaaagaatgcaacttttaaatgtttcagaacatatagtttgtgttggttgaaggctcatagacctaatgttttatat |
363 |
Q |
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| T |
31440519 |
ttgacttagatttaggttatttaaaaagaacgcaacatttaaatgtttcagaatatatagtttgtgttggttgaaggct-gtatacctaatgttttatat |
31440617 |
T |
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| Q |
364 |
gattatcatgtttggtggagtaa |
386 |
Q |
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| T |
31440618 |
gattatcatgtttggtggagtaa |
31440640 |
T |
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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 328 - 386
Target Start/End: Original strand, 33609049 - 33609107
Alignment:
| Q |
328 |
tgttggttgaaggctcatagacctaatgttttatatgattatcatgtttggtggagtaa |
386 |
Q |
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| T |
33609049 |
tgttggttgaaggctcataagcctaatgttttttatgattttcatgctttgtggagtaa |
33609107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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